Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g154 ATGCTTCTTGCGGCCCGGGCATTGACCCATTTATGTGATGTGCTGCCTTCTTCATGTGCAGCAGTAGTGCATTATGGTGCAGTTTCATGCTTCTGTGCTAGGTTACTCACAATTGAGTATATGGACTTGGCTGAACAGTCTTTGCAAGCTCTTAAGAAGATATCTCAGGAACACCCAACTGCCTGCTTGCGAGCTGGAGCACTCATGGCAGTGCTTTCATATCTGGATTTCTTCTCCACGGGGGTCCAGCGAGTGGCCTTGTCTACAGCTGCAAATATGTGCAAGAAACTCCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTCCCTCTGTTGACGAACCTTCTGCAGTATCATGATGCTAAGGTGTTAGAACATGCTTCTGTTTGCTTGACTCGAATTGCTGAAGCATTTGCTTCATCTCCGGATAAATTGGATGAACTATGCAATCATGGACTAGTTGACCAAGCTGCCTCTCTCATTTCCACCAGTAATTCTGGGGGTGGGCAGGCATCCCTTAGCACGCCGACGTACACGGGGTTAATCCGACTTCTTTCTACATGTGCAAGTGGGTCTCCTTTGGGAGCCAAAACTCTGCTTCTCCTAGGTATCAGTGGCATTCTTAAAGATATATTATCAGGTTCTGGCCTTGTTGCAAGCATATCTGTTTCACCTGCTATAAGTCGACCGCCTGAGCAGATTTTTGAGATCGTTAACCTTGCAAATGAGCTGCTGCCTCCACTTCCAGAAGGAATCATTTCTCTTCCAGCTAGCTCCAATCTTCTTGTTAAAGGGACTCTTGTGAAGAAGGCTCCATCTAGCAGTTCTGGGAAACAGGAAGATGTCAATGGAAATGTGCCTGAGGTTTCTGCTCGTGAGAAACTATTAAATGATCAGCCCGAGCTTCTGCAGCAATTTGGAATGGACCTTCTTCCTGTTCTAATACAGATCTATGGATCCAGTGTGAATGGCCCTGTTCGCCATAAATGTTTGTCAGTTATTGGAAAATTAATGTACTTCAGCACCGCAGATATGATCCAGTCTTTGATTAGTGTGACAAACATATCAAGTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCAAGTGTTGGTTCCTGCCCTCCAAATAGCTGAGATCCTGATGGAAAAACTTCCTGGGACGTTTTCCAAGATGTTTGTGAGGGAAGGTGTTGTTCATGCTATAGATACATTAATTTTGGCTGGGTCTCAAAATGCAGTTTCTGTTCAACCATCTTCCAATGAGAAGGATAATGATTCTATAACTGGAACATCACGGTCTAGGCGTTATCGAAAACCTTTCAAAGACAAGTACTTCCCTTCAGATCCTGGCTGTGCTGAAGCTGGAGTTACGGATGATCTTCTACATTTAAAGAATCTTTGCATGAGGTTGAGTTCTGGAATTGATGATCACAAGACCAAAGCAAAGGGAAAGTCTAAAGCTTCTGGGCATCGCCTTATTGACACATCTACTAATAAAGAGGAGAATTTGACTGCATTTCGGACCCAAGCACTTAAAAGATTTAAGTCTTTTGTTGCAATTGCCCTTCCATCCAATATTGATGGAAGGAATGCTGCTCCTATGACTGTCTTAGTTCAGAAACTTCAAAATGCTTTATCCTCCTTGGAACGTTTTCCAGTGGTGCTTAGCCATTCATCTAGATCTTCTAGCGGAAATGCACGTCTCTCTTCTGGACTAAGTGCATTGTCTCAACCATTCAAGCTGCGGCTTTGTCGAGCCCAAGGGGAAAAATCTCTCCGCGATTATTCTTCCAATGTTGTACTGATTGACCCATTAGCTAGTTTAGCAGCTGTTGAGGACTTTCTTTGGCCCCGAAAAACCCCAAGCTCATCAAAGGGCAAGGGTAAAGCAGTTCTCAAACCTGCCCAGGAGGATGCAAGAGGACCTCAAACAAGAAATGCAGCTCGTAGAAGGGCATCTCTAGATAAAGATGCACAGCTGAAACCTGTGGGAGATTCTAGTTCTGAGGATGAAGAGTTGGATATATCTCCTGTTGAGATTGATGATGCATTAGTTATTGAAGATGATGATATCTCAGATGACGAAGATGATGACCATGATGATGTGCTAAGAGATGATTCTCTACCTGTTTGCATGCCAGACAAAGTGCATGATGTGAAATTGGGTGACTCAGCTGAAGATAGTAATAATGCTCCTGCAACAAGTGATAGTCAGACCAATGCAGCTTCCGGTTCTAGTAGCAGAGCTGCTGCAGTTAAGGGTTTGGACTCCACTGAGTTTAGGAGTGGGAACTCTTTTGGTTCAAGGGGGGCAATGTCATTTGCTGCTGCTGCAATGGCAGGACTTGCATCTGCAAATGGTAGAGGTATCAGGGGAGGCAGAGATCGGCATGGACGCCCTCTATTTGGTTCTAGTGATCCTCCTAGATTAATATTTTCTGCAGGCGGGAAGCAGCTTAATAGGCACTTAACAATTTATCAGGCCATCCAACGCCAACTTGTGCTAGATGAGGACGATGATGAAAGATACAATGGCAGATCAAGTTCTGCTACCCACATCTTGCAGGATGAGCTTAGTGCAACTGGTGCCAGGGTTCCATATGAGGAATTTATCAATAGCAAGCTAACTCCGAAGTTGGCCCGCCAAATCCAGGATGCTCTTGCACTGTGTAGTGGTAGTCTTCCATCGTGGTGTTACCAGGTGACAAAAGCATGTCCATTCTTGTTTCCTTTTGAGACCCGGCGACAGTATTTCTACTCAACTGCTTTTGGATTGTCACGTGCTTTATATCGGCTCCAGCAGCAACAAGGTGCAGATGGTCATGGATCAACAAATGAAAGAATTGGGAGATTGCAGCGCCAAAAAGTTCGTGTCTCAAGAAACCGCATTTTAGACTCTGCTGCAAAAGTCATGGAGATGTATTCTAGCCAAAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGATTAGGTCCTACATTGGAGTTCTATACCCTTCTAAGTCATGACCTACAGAAGGTTGGGCTTGGCATGTGGAGTCCTGCTGCCAGCGATATTGTCCAAGCTCCCCTTGGGTTGTTCCCTCGGCCCTGGCCTCCAAATGCTGATGCTTCTGATGGTAGCCAATTCTCTAAGGTTATTGAACATTTTCGCTTGGTTGGGCGTGTGATTGCCAAAGCCCTTCAAGATGGGCGGCTCTTGGACCTGCCATTATCGACAGCACTTTACAAGCTTGTGCTTGGTCAAGAGCTTGATTTGCATGATATTCTTTCTTTTGATGCCGATTTTGGGAAGATCTTGCAAGAACTACAAGTCCTTGTTAGTCGGAAACAGTATCTAGAATCGACGGGTGGTGATAATCAGGATGCGATTGCTAATTTATGTTTCCGTGGGGCGCCAATAGAAGATCTCTGTCTGGATTTCACTCTTCCTGGTTATCCAGACTACATTTTGAAACCAGGAGAAGAAAATGTGGATATTAATAACTTGGAGGAATATATATCTTTGGTCGTTGATGCAACCGTTAAAACTGGAATTATGCGGCAAATGGAAGCATTTAGATCAGGTTTCAATCAGGTTTTTGACATCACATCTCTACAAATATTCTCTCCGGATGAATTGGATTATTTGCTATGTGGCAGAAGAGAGTTGTGGGAGGCTGAGACACTTGTTGATCACATAAAGTTCGATCATGGATACACCGCCAAGAGCCCTGCAATCATTAATTTACTTGAGATTATGGGAGAATTCAACCCAGAGCAGCAGCGGGCCTTCTGCCAGTTCGTCACTGGCGCACCTAGACTGCCGCCTGGTGGTCTGGCAGTGCTGAATCCAAAGCTGACTATTGTCAGAAAGCATTCTTCGAGCACAGTCAGCACAGCAGCCAATGGTAGTTCTGGCCCATCGGAATCAGCGGATGATGACTTGCCCAGTGTCATGACATGTGCTAATTACCTCAAGCTTCCTCCGTACTCTACCAAGGAAATCATGTACAAGAAACTTCTGTATGCGATCAGCGAGGGACAGGGGTCTTTTGATTTGTCATGA 4059 44.89 MLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVDQAASLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGLVASISVSPAISRPPEQIFEIVNLANELLPPLPEGIISLPASSNLLVKGTLVKKAPSSSSGKQEDVNGNVPEVSAREKLLNDQPELLQQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTADMIQSLISVTNISSFLAGVLAWKDPQVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDTLILAGSQNAVSVQPSSNEKDNDSITGTSRSRRYRKPFKDKYFPSDPGCAEAGVTDDLLHLKNLCMRLSSGIDDHKTKAKGKSKASGHRLIDTSTNKEENLTAFRTQALKRFKSFVAIALPSNIDGRNAAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGNARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEDFLWPRKTPSSSKGKGKAVLKPAQEDARGPQTRNAARRRASLDKDAQLKPVGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHDDVLRDDSLPVCMPDKVHDVKLGDSAEDSNNAPATSDSQTNAASGSSSRAAAVKGLDSTEFRSGNSFGSRGAMSFAAAAMAGLASANGRGIRGGRDRHGRPLFGSSDPPRLIFSAGGKQLNRHLTIYQAIQRQLVLDEDDDERYNGRSSSATHILQDELSATGARVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQVTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNERIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLGMWSPAASDIVQAPLGLFPRPWPPNADASDGSQFSKVIEHFRLVGRVIAKALQDGRLLDLPLSTALYKLVLGQELDLHDILSFDADFGKILQELQVLVSRKQYLESTGGDNQDAIANLCFRGAPIEDLCLDFTLPGYPDYILKPGEENVDINNLEEYISLVVDATVKTGIMRQMEAFRSGFNQVFDITSLQIFSPDELDYLLCGRRELWEAETLVDHIKFDHGYTAKSPAIINLLEIMGEFNPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSTVSTAANGSSGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS* 1353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1612328 1639335 + Vvi3g154 Vvi3g154 783829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g154 1352 SUPERFAMILY Hect, E3 ligase catalytic domain 948 1345 IPR035983 GO:0004842
Vvi3g154 1352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1 439 IPR045322 GO:0006511|GO:0061630
Vvi3g154 1352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 439 505 IPR045322 GO:0006511|GO:0061630
Vvi3g154 1352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 501 620 IPR045322 GO:0006511|GO:0061630
Vvi3g154 1352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 622 847 IPR045322 GO:0006511|GO:0061630
Vvi3g154 1352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1021 1352 IPR045322 GO:0006511|GO:0061630
Vvi3g154 1352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 857 1020 IPR045322 GO:0006511|GO:0061630
Vvi3g154 1352 MobiDBLite consensus disorder prediction 704 725 - -
Vvi3g154 1352 Gene3D - 1 414 IPR011989 -
Vvi3g154 1352 Gene3D Hect, E3 ligase catalytic domain 1222 1350 - -
Vvi3g154 1352 MobiDBLite consensus disorder prediction 644 669 - -
Vvi3g154 1352 Coils Coil 1351 1352 - -
Vvi3g154 1352 SUPERFAMILY ARM repeat 2 407 IPR016024 -
Vvi3g154 1352 CDD HECTc 955 1347 IPR000569 GO:0004842
Vvi3g154 1352 MobiDBLite consensus disorder prediction 620 751 - -
Vvi3g154 1352 MobiDBLite consensus disorder prediction 728 751 - -
Vvi3g154 1352 Pfam HECT-domain (ubiquitin-transferase) 1038 1352 IPR000569 GO:0004842
Vvi3g154 1352 SMART hect_3 966 1352 IPR000569 GO:0004842
Vvi3g154 1352 Gene3D Hect, E3 ligase catalytic domains 897 1113 - -
Vvi3g154 1352 MobiDBLite consensus disorder prediction 670 703 - -
Vvi3g154 1352 ProSiteProfiles HECT domain profile. 979 1352 IPR000569 GO:0004842
Vvi3g154 1352 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Vvi3g154 1352 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 622 847 - -
Vvi3g154 1352 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1021 1352 - -
Vvi3g154 1352 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 1 439 - -
Vvi3g154 1352 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 501 620 - -
Vvi3g154 1352 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 857 1020 - -
Vvi3g154 1352 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 439 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g154 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - vvi:100264024 1382.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g154 Vvi4g1154 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48