Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g158 ATGAGTGCTTCAAGGTTCATTAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTTATCTCCTACACCAGCAACACTTTCCCCACGGATTATGTGCCAACTGTATTTGACAATTTCAGTGCAAATGTTGTGGTGGATGGGAGCACTGTTAATCTAGGGTTGTGGGATACTGCAGGCCAGGAGGATTACAATAGGTTGAGACCTTTGAGCTACCGTGGTGCAGATGTCTTTCTGCTTGCTTTCTCCCTCATTAGCAAGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCCGGTGTTCCAATAATTCTTGTCGGGACAAAGCTTGATCTTCGAGATGATAAGCAGTTCTTCATAGATCACCCTGGTGCAGTGCCCATTACCACAGCTCAGGGAGAGGAACTGAGAAAGCTGATTGGAGCTCCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGAACGTGAAGGCTGTCTTTGATGCGGCCATTAAGGTGGTTCTCCAGCCACCAAAGCAGAAGAAGAGAAAGAAGAGAAAGGCACAGAAAGCTTGTTCTATATTGTGA 597 46.57 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKRKKRKAQKACSIL* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1655925 1660436 + Vvi3g158 Vvi3g158 783833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g158 198 CDD Rop_like 6 178 - -
Vvi3g158 198 Gene3D - 5 192 IPR027417 -
Vvi3g158 198 ProSiteProfiles small GTPase Ras family profile. 2 198 IPR001806 GO:0003924|GO:0005525
Vvi3g158 198 PANTHER RHO FAMILY GTPASE 1 198 IPR003578 GO:0005525|GO:0007264
Vvi3g158 198 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Vvi3g158 198 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 198 - -
Vvi3g158 198 SMART rab_sub_5 7 180 - -
Vvi3g158 198 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Vvi3g158 198 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Vvi3g158 198 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Vvi3g158 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Vvi3g158 198 ProSiteProfiles small GTPase Rab1 family profile. 2 198 - -
Vvi3g158 198 PRINTS Transforming protein P21 ras signature 7 28 - -
Vvi3g158 198 PRINTS Transforming protein P21 ras signature 30 46 - -
Vvi3g158 198 PRINTS Transforming protein P21 ras signature 47 69 - -
Vvi3g158 198 PRINTS Transforming protein P21 ras signature 109 122 - -
Vvi3g158 198 PRINTS Transforming protein P21 ras signature 155 177 - -
Vvi3g158 198 SMART ras_sub_4 4 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g158 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - vvi:100253703 372.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g158 Vvi4g1156 ECH
Vvi3g158 Vvi18g1147 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272