Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g16 ATGGCTACTGTTGTTGTGTGTTGGTGCCTGAAAAAGCTGGCAAAACCCCCTAGCTTTGTGATGATGCTGATGATGAGGCAAGGAGGATCACGAAGCTTGAGCTGCCAAGACTGTGGAAACCAAGCAAAGAAGGACTGTCTTCACATGAGATGCAGAACCTGCTGTAAAGGCCGAGGGTTTCAGTGCCAGACCCATGTCAAGAGCACTTGGGTTCCTGTATATAGAAGGCGCCAGAGGCAACAACACCTTCCCGCTACTACCGTTCCTCAACAGCTCCTCCAAGGACACAACCCTAGACCTACATCATCAGGTACTACTGTTGCACCCACTACAGATCCTCATAAAGCGAGGAATTTTCCGGCTGAAGTGAGTTCTCCGGCGATGTTTCGCCGTGTTAGGGTGAACTCCATCGACAATGCAGTTGATCAGTATGCATATCAGACGGCTGTGATCATCGGAGGCCATATTTTCAAGGGTATTCTCTATGATGAAGGCCCTGAAATTCAGTTCATCGGTGGCGGTGAGAGCTTATTTCCTCAACTGCAGCAGCCAACCATAGTTGCTAGTACCTTCACTGCTGCCATGGAACTTCTCCATCCTTCTTCTTCATACCCAATTAACAGCACTAGTACTACTACTGCTCCTGTGCCTGGTACGCACGTTATCCCACATCGAAGATCTTGA 684 48.98 MATVVVCWCLKKLAKPPSFVMMLMMRQGGSRSLSCQDCGNQAKKDCLHMRCRTCCKGRGFQCQTHVKSTWVPVYRRRQRQQHLPATTVPQQLLQGHNPRPTSSGTTVAPTTDPHKARNFPAEVSSPAMFRRVRVNSIDNAVDQYAYQTAVIIGGHIFKGILYDEGPEIQFIGGGESLFPQLQQPTIVASTFTAAMELLHPSSSYPINSTSTTTAPVPGTHVIPHRRS* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 288652 289862 - Vvi3g16 Vvi3g16 783691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g16 227 MobiDBLite consensus disorder prediction 92 119 - -
Vvi3g16 227 PANTHER PROTEIN SHORT INTERNODES 21 221 - -
Vvi3g16 227 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 34 76 IPR006510 -
Vvi3g16 227 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 119 166 IPR006511 -
Vvi3g16 227 MobiDBLite consensus disorder prediction 92 112 - -
Vvi3g16 227 MobiDBLite consensus disorder prediction 206 227 - -
Vvi3g16 227 Pfam Domain of unknown function (DUF702) 33 167 - -
Vvi3g16 227 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 21 221 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g16 Vvi18g1034 ECH
Vvi3g16 Vvi4g1063 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14637 PF05142 DUF702 1.10E-56 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g16 - - vvi:100257301 382.874