Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g160 ATGACAGTTGAGGTTGTTGAGAAGAAGAATGTGCTGGTGGGTATTAGGGTTGACAGCCATAGCAGAGAGCTGCTGAATTGGGCTATAGTGAAAGTTGCAGAACCCGGAGATTGTGTGGTTGCAGTTCATGTTAGTGAAGATCTTTCTTTGAGAGATAAGCTCTTGTTGGAGGGCTATTTGGAGGTTCATGAACGCCTCTGCGATATAAAGCAGGTGGATCTCATTGGGCAGGTCTTACCAGGAAGATCAATCAAAAGGGTTCTGGTGAGAGAGGCCAAGAGATGTGCTGCTGCAGCTGTTGTTGTGGGGATAAACTGGAAAAATGCAATTGGGGGTTGGGCTTCAATGGCTAGATATTGCGCAAAGAGGCTGCCCTCTGACACTGAAGTTCTCGCTATTCACAATGGGAAGGTTGTTTTCAGAAGGTGTTCCAATGGCCAAATACCAGGTGATCCCAGACCGAGCTTTTATCTACCTGGGAACTCTAATCCCAGAGAAACACAATCTGAATTTGCTGATTCTGAGGCATCAGATATTGAAAGAGCCAGTTCTGTAGTACTTCAGAGCTATGAAGAAGGATCAGATAAAGGCCTGAAGGACAACAACTTCAGCCTGGGCAATGAACACAAGAAAGTTTCCAGGAGATCGAATTCACTTTTTGTTGGAGACCCTTCAGAGCAAAGGCCTGGTTGGCCCCTACTGCGAAGGACTAATTCGGTGATCCCACAGGCTCCAAATGGAAGAACAATGTCTGTTGTGCAGTGGGTAATGAGCTTACCAGACCGTTCTCCGCCAGAAACTCCTCAATGCCCAGATAAAACAGAAAAGCTGCCTAAAGAACTAGAACTTCTCCTCAAAACAAACTCATCTGATTGCAGGTGGTTCAGTCATGAGGTTTTGAAAGCTTCAACTTCTCAATTCTCCTCAGAAAATCTGATTGGGAAAGGAGGATGTAACCGTGTATACAAGGGTATTCTGCCAAACAGCAAACAAGTGGCAGTAAAGGTTCTGAAGTCATCCAAAGAAGCATGGAAGGATTTTGCCATGGAAGTCAATATCATGTCCTCATTGAAGCACCGACACATTGCCCCTCTGCTTGGGATCTGCCTTGAAGATAGTCATCTAATTTCGGTGTATGAGTTCTTTTCTAGAGGAAGTTTAGAGGAAAACCTACATGGTAGCATCAAACACAAATCAGCATTGTCATGGGAAGTGAGATTCAATTTAGCTGTAGGCGTTGCAGAAGCCCTAAACTACTTACACAATGAGTGTTCTAAACCTGTTATTCATAGAGATATCAAGTCTTCAAACATTCTTCTTTCCAATGATTTTGAACCACAGTTAGCCGACTTTGGCCTCGCTATATGGGGACCCACAACTTCTTCCTTTCTAACACATGGCGATGTAGTTGGAACTTTTGGGTATCTTGCTCCTGAGTATTTCATGTATGGTAAAGTCAGTGATAAAATCGATGTCTACTCTTTTGGTGTGGTTCTCCTTGAATTATTATCAGGAAGAAAGCCAATTGGTTCTGAGAGCCCCAAGGGCCAAGAAAGCTTGGTAATGTGGGCAAAACCAATATTGGAGAGTGGAAATCTAAGAAGTATAATGGATCCAGACCTGGATGGAAAATTTGATGAGGTTCAAATGCAAAGAACGGTTCTTGCAGCTACACTTTGCATCACACAGGCAGCCAGGCGTCGCCCCAAAATAAGCCAGATACTGAAGCTATTGAGAGGGGAGAAAGATGTTGCTAAGTGGGTGAACTCCCAAATTGAAGATCAACATGATTTAGAAAATCAGGATGAAAATGATGATGAAGTTTATCCAGATTCAAGTGCAGAGTCACACCTGGGTCTTGCTTTGCTTGATGTGGATGATAATTTTACATCATTCAGCAGCATGGAGCAAGGCAACCGCCTTTCCTTAGAGGAATATATGAAAGGAAGATGGAGCAGATCATCAAGCTTAGAGTAG 1977 43.55 MTVEVVEKKNVLVGIRVDSHSRELLNWAIVKVAEPGDCVVAVHVSEDLSLRDKLLLEGYLEVHERLCDIKQVDLIGQVLPGRSIKRVLVREAKRCAAAAVVVGINWKNAIGGWASMARYCAKRLPSDTEVLAIHNGKVVFRRCSNGQIPGDPRPSFYLPGNSNPRETQSEFADSEASDIERASSVVLQSYEEGSDKGLKDNNFSLGNEHKKVSRRSNSLFVGDPSEQRPGWPLLRRTNSVIPQAPNGRTMSVVQWVMSLPDRSPPETPQCPDKTEKLPKELELLLKTNSSDCRWFSHEVLKASTSQFSSENLIGKGGCNRVYKGILPNSKQVAVKVLKSSKEAWKDFAMEVNIMSSLKHRHIAPLLGICLEDSHLISVYEFFSRGSLEENLHGSIKHKSALSWEVRFNLAVGVAEALNYLHNECSKPVIHRDIKSSNILLSNDFEPQLADFGLAIWGPTTSSFLTHGDVVGTFGYLAPEYFMYGKVSDKIDVYSFGVVLLELLSGRKPIGSESPKGQESLVMWAKPILESGNLRSIMDPDLDGKFDEVQMQRTVLAATLCITQAARRRPKISQILKLLRGEKDVAKWVNSQIEDQHDLENQDENDDEVYPDSSAESHLGLALLDVDDNFTSFSSMEQGNRLSLEEYMKGRWSRSSSLE* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1670609 1674073 + Vvi3g160 Vvi3g160 783835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g160 658 SUPERFAMILY Protein kinase-like (PK-like) 288 578 IPR011009 -
Vvi3g160 658 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 127 - -
Vvi3g160 658 Gene3D Phosphorylase Kinase; domain 1 272 381 - -
Vvi3g160 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vvi3g160 658 PANTHER OS08G0249100 PROTEIN 6 632 - -
Vvi3g160 658 Gene3D Transferase(Phosphotransferase) domain 1 382 597 - -
Vvi3g160 658 CDD USP_Like 10 128 - -
Vvi3g160 658 Gene3D HUPs 8 135 IPR014729 -
Vvi3g160 658 Pfam Protein kinase domain 308 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g160 658 MobiDBLite consensus disorder prediction 151 179 - -
Vvi3g160 658 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 6 632 - -
Vvi3g160 658 SMART serkin_6 307 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g160 658 ProSiteProfiles Protein kinase domain profile. 307 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g160 - - - vvi:100245139 1296.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g160 Vvi18g209 ECH
Vvi3g160 Vvi18g1149 ECH
Vvi3g160 Vvi4g1322 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76559 PF00069 Pkinase 8.00E-43 CL0016 Vvi PK