Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g163 ATGGGAGAAGAAGAAATGAGTGTTGAGCAGGTGGAGGAGGAGTTCACAGTGTGGAAGAAGAACACTCCATTTCTCTACGATCTCATCATCTCTCACCCCCTCGAATGGCCTTCTCTCACTGTTCAATTCCTCCCATCTCCTCCGCTCCCCTACGCCCTCGACTCATTCTCCGTTCACAAACTTGTCCTCGGGACCCACACCTCCGACGGCTTCCCCAACTACCTCATGGTCGCCGACGCATTCCTCCCCAGAAACACCGCCGCCCCATCTGAGCAAAACCCCACGATTCCTAAGGTGGAGATAACGAAGAAAATACATGTGGATGGAGAAGTAAATCGAGCTCGGTGTATGCCACAAAACCCAGATATGGTTGCTGCTAAGACAAGTGGTTTGGAAGTGTACGTTTTTAACTGTCAAAAGCCGCCGGTGGGGGGCGAAGGACGGTCTTGCAATCCTGATTTGAGGTTAAGGGGTCATGAGAAAGAAGGGTATGGGTTGTCTTGGAGTTCCTTTAAAGGGGGTTATGTTTTGAGTGGTTCAAATGATTGCAAGGTATGCTTATGGGATGTGTCTGCATCTGCTGAAGATAAAGTGCTAGGCGCAATGCATGTTTACGAGGCTCATGAAAACGTGGTAGAAGATGTGTCCTGGCATTTGAAGAATGAAAATCTATTTGGATCAGTGGGGGATGATTGTCGATTAATGATTTGGGACTTGCGTTTGGACAAACCTCAGCATTCTGTTATAGTTCATGAGAAAGAGGTGAATTTTCTTTCTTTCAATCCATATAATGAATGGATTCTGGCTACAGCATCTTCAGACACTACTGTTGGGCTGTTCGATATGCGGAAGCTGAACTCACCATTGCATGTTTTAAGCAGCCACACGGAGGAGGTATTCCAGGTAGAATGGGATCCCAATCATGAAACTGTGTTGGCTTCTTCTGCTGATGACCGGAGGTTGATGGTTTGGGATCTTAACAGGATTGGGGAGGAGCAGTTAGAAGGAGATGCTGCAGATGGTCCTCCTGAGCTTCTCTTTTCTCATGGGGGTCATAAAGCCAAGATATCAGACTTCTCCTGGAACAAAAATGAGCCATGGGTTATTTCAAGTGTAGCTGAGGACAATACTCTTCAGATCTGGAAAATGACCGAGGGTATTTATCGAGATGAGGATGGCACACAAACTGCTGATGATCATTCATAG 1206 46.77 MGEEEMSVEQVEEEFTVWKKNTPFLYDLIISHPLEWPSLTVQFLPSPPLPYALDSFSVHKLVLGTHTSDGFPNYLMVADAFLPRNTAAPSEQNPTIPKVEITKKIHVDGEVNRARCMPQNPDMVAAKTSGLEVYVFNCQKPPVGGEGRSCNPDLRLRGHEKEGYGLSWSSFKGGYVLSGSNDCKVCLWDVSASAEDKVLGAMHVYEAHENVVEDVSWHLKNENLFGSVGDDCRLMIWDLRLDKPQHSVIVHEKEVNFLSFNPYNEWILATASSDTTVGLFDMRKLNSPLHVLSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGEEQLEGDAADGPPELLFSHGGHKAKISDFSWNKNEPWVISSVAEDNTLQIWKMTEGIYRDEDGTQTADDHS* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1684207 1690440 - Vvi3g163 Vvi3g163 783838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g163 401 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Vvi3g163 401 SMART WD40_4 149 189 IPR001680 GO:0005515
Vvi3g163 401 SMART WD40_4 285 325 IPR001680 GO:0005515
Vvi3g163 401 SMART WD40_4 342 382 IPR001680 GO:0005515
Vvi3g163 401 SMART WD40_4 241 281 IPR001680 GO:0005515
Vvi3g163 401 SMART WD40_4 198 238 IPR001680 GO:0005515
Vvi3g163 401 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 3 399 - -
Vvi3g163 401 Gene3D - 2 401 IPR015943 GO:0005515
Vvi3g163 401 ProSitePatterns Trp-Asp (WD) repeats signature. 176 190 IPR019775 -
Vvi3g163 401 SUPERFAMILY WD40 repeat-like 104 387 IPR036322 GO:0005515
Vvi3g163 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 247 IPR001680 GO:0005515
Vvi3g163 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 327 IPR001680 GO:0005515
Vvi3g163 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 386 IPR001680 GO:0005515
Vvi3g163 401 PRINTS G protein beta WD-40 repeat signature 176 190 IPR020472 -
Vvi3g163 401 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Vvi3g163 401 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Vvi3g163 401 PANTHER WD40 REPEAT FAMILY 3 399 - -
Vvi3g163 401 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 13 83 IPR022052 -
Vvi3g163 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 198 IPR001680 GO:0005515
Vvi3g163 401 Pfam WD domain, G-beta repeat 243 281 IPR001680 GO:0005515
Vvi3g163 401 Pfam WD domain, G-beta repeat 346 382 IPR001680 GO:0005515
Vvi3g163 401 Pfam WD domain, G-beta repeat 202 238 IPR001680 GO:0005515
Vvi3g163 401 Pfam WD domain, G-beta repeat 287 325 IPR001680 GO:0005515
Vvi3g163 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g163 K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 - vvi:100265787 832.402
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33