Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g169 ATGCAATCAATCATTCCTAGAAACATGTCTTTTAGACTTCGGCCTCGATGTGGTGGCGGCGATGGAGTTGCTGGTGATCAAGCCCATGATCGAGGACCCATGATCGACAATGCGATTCCGTTGCCGAACGTCACCAGCAAGATCCTTGCAAAGGTGATCGAGTACTGCAAGAAGCACGTTGAAACTCCTAAGGCGGAGGAACACGCCGTCAATGATGAACTCAAGGCTTGGGATGCTGATTTCGTCAAAGTCGATCAGGCCACCCTCTTTGACCTCATCTTGGCAGCAGATTATCTAGATATCAAGAGCCTGTCGGATTTGACCTGCCAAACTGTTGCTGACATGATGAAGGGAAAGACTGCGGAGGAAATTCGCAAGACACTCAACATCAAGAATGACCTCACTCCAGAGGAAGAGGAGGAGATCCGGAGAGAGAACCGATGGATATTTGATTAA 456 48.68 MQSIIPRNMSFRLRPRCGGGDGVAGDQAHDRGPMIDNAIPLPNVTSKILAKVIEYCKKHVETPKAEEHAVNDELKAWDADFVKVDQATLFDLILAADYLDIKSLSDLTCQTVADMMKGKTAEEIRKTLNIKNDLTPEEEEEIRRENRWIFD* 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1740699 1746162 - Vvi3g169 Vvi3g169 783844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g169 151 CDD BTB_POZ_SKP1 36 116 - -
Vvi3g169 151 Pfam Skp1 family, tetramerisation domain 37 60 IPR016073 GO:0006511
Vvi3g169 151 Pfam Skp1 family, dimerisation domain 102 149 IPR016072 GO:0006511
Vvi3g169 151 PANTHER SCF UBIQUITIN LIGASE, SKP1 COMPONENT 13 151 - -
Vvi3g169 151 PANTHER SKP1 13 151 IPR016897 GO:0006511
Vvi3g169 151 Gene3D Potassium Channel Kv1.1; Chain A 20 151 IPR011333 -
Vvi3g169 151 SUPERFAMILY Skp1 dimerisation domain-like 74 148 IPR036296 GO:0006511
Vvi3g169 151 SUPERFAMILY POZ domain 34 62 IPR011333 -
Vvi3g169 151 SMART skp1_3 8 101 IPR001232 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g169 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - vvi:100257179 202.601
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86