Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g171 ATGGCCAAGCCAGTTTCAATTGAGGTTTGGAACCCCTGTGGGAAATACAGAGTTGTCAGCACAAAACCGATGCCGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTTATTGGTGATAAGTGTGATGGAGTGATTGGACAGTTGACAGAAGATTGGGGGGAGACGCTGTTTTCGGCTTTGAGCAGGGCTGGAGGCAGGGCTTTTAGCAACATGGCTGTTGGATACAACAATGTTGATGTGAATGCTGCTAATAAGTACGGTGTTGCTGTTGGGAACACTCCAGGAGTACTTACAGAGACTACAGCAGAGCTAGCAGCCTCACTTTCTATGGCAGCTGCTCGAAGAATAGTTGAAGCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGTCGTATTGGATCTGCGTATGCTAGAATGATGGTAGAAGGGTTCAAAATGAACCTGATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAAGAGCTGCAAGTATGGATGAGGTGCTCCGAGAGGCTGATCTTATTAGTCTCCATCCAGTATTGGATAAGACCACTTATCATCTAGTCAACAAGGAAAGGCTCTCAATGATGAAGAAGGAAGCGATCCTTATAAACTGCAGCAGAGGGCCTGTGATTGATGAAGTAGCTTTGGTGGCACATCTGAAAGAGAACCCCATGTTTCGAGTTGGACTTGATGTCTTTGAGGATGAACCTTACATGAAACCTGGTCTTGCTGAAATGAAGAACGCGATCGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCATTCCTCAACGAGAACTCCCTGCCCCCAGCTGCATCTCCAAGTATAGTCAATGCAAAAGCCTTAGGTTTGCCTGTTTCAAAGCTATGA 1161 45.91 MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLISLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFEDEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFLNENSLPPAASPSIVNAKALGLPVSKL* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1749590 1753021 - Vvi3g171 Vvi3g171 783846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g171 386 Gene3D - 18 346 - -
Vvi3g171 386 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
Vvi3g171 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 323 IPR036291 -
Vvi3g171 386 PANTHER ZGC:136493 28 348 - -
Vvi3g171 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 30 346 IPR006139 GO:0016616|GO:0051287
Vvi3g171 386 Gene3D - 118 321 - -
Vvi3g171 386 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 28 348 - -
Vvi3g171 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 322 IPR006140 GO:0051287
Vvi3g171 386 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Vvi3g171 386 CDD GDH 16 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g171 K15893 HPR1; glycerate dehydrogenase [EC:1.1.1.29] - vvi:100262344 761.911
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g171 . . . . . . . . Cmo19g00752 . . . . . . . Cpe15g00597 . . . . . . . . . . . . . . . Cone8ag1289 . . . Csa07g00106 . . . . . . . . . . . . . Cma11g01377 Cma19g00743 . Car19g00572 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32