Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3g172 | ATGATTTTCATTCTCGTCTACTGCACTGCCGGAATCTCTGGTGGGCACATCAACCCTGCTGTGACCTTCGGGTTGTTCTTGGCCAGGAAGGTGTCTCTTATCCGGGCTTTGGCCTACATGGTGGCTCAGTGTTTGGGAGCCATTTGCGGTGTTGGGTTGGTGAAAGCCTTCATGAAATCCTTCTACAATTCACTTGGTGGTGGTGCCAACTCCGTCGCTGCCGGCTACAACAAAGGCACAGCTCTTGGTGCTGAAATCATTGGCACTTTCGTGCTCGTGTACACTGTTTTCTCAGCCACTGACCCCAAGAGAAGCGCCAGAGATTCCCACGTCCCTGTTTTGGCTCCCCTGCCCATTGGGTTTGCTGTCTTCATGGTCCACCTTGCCACCATCCCCATAACCGGCACCGGCATCAACCCCGCCAGGAGCTTCGGCGCCGCCGTCATCTACAACAATGAAAAAGTTTGGGACGACCAGTGGATCTTCTGGGTCGGACCATTTGTGGGAGCACTAGCTGCAGCAGCATACCACCAGTACATACTGAGAGCAGCTGCCATCAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAACTAA | 597 | 53.94 | MIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCLGAICGVGLVKAFMKSFYNSLGGGANSVAAGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKVWDDQWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* | 199 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1760910 | 1762467 | + | Vvi3g172 | Vvi3g172 | 783847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3g172 | 198 | CDD | MIP | 1 | 180 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | TIGRFAM | MIP: MIP family channel proteins | 2 | 176 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | Pfam | Major intrinsic protein | 1 | 177 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | PANTHER | AQUAPORIN PIP-TYPE-RELATED | 1 | 198 | - | - | |
Vvi3g172 | 198 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 198 | IPR034294 | - | |
Vvi3g172 | 198 | PRINTS | Major intrinsic protein family signature | 35 | 54 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | PRINTS | Major intrinsic protein family signature | 84 | 102 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | PRINTS | Major intrinsic protein family signature | 120 | 142 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | PRINTS | Major intrinsic protein family signature | 160 | 180 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi3g172 | 198 | SUPERFAMILY | Aquaporin-like | 2 | 182 | IPR023271 | - | |
Vvi3g172 | 198 | Gene3D | Glycerol uptake facilitator protein. | 1 | 198 | IPR023271 | - | |
Vvi3g172 | 198 | ProSitePatterns | MIP family signature. | 16 | 24 | IPR022357 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi3g172 | K09872 | - | vvi:100233027 | 398.282 |