Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g172 ATGATTTTCATTCTCGTCTACTGCACTGCCGGAATCTCTGGTGGGCACATCAACCCTGCTGTGACCTTCGGGTTGTTCTTGGCCAGGAAGGTGTCTCTTATCCGGGCTTTGGCCTACATGGTGGCTCAGTGTTTGGGAGCCATTTGCGGTGTTGGGTTGGTGAAAGCCTTCATGAAATCCTTCTACAATTCACTTGGTGGTGGTGCCAACTCCGTCGCTGCCGGCTACAACAAAGGCACAGCTCTTGGTGCTGAAATCATTGGCACTTTCGTGCTCGTGTACACTGTTTTCTCAGCCACTGACCCCAAGAGAAGCGCCAGAGATTCCCACGTCCCTGTTTTGGCTCCCCTGCCCATTGGGTTTGCTGTCTTCATGGTCCACCTTGCCACCATCCCCATAACCGGCACCGGCATCAACCCCGCCAGGAGCTTCGGCGCCGCCGTCATCTACAACAATGAAAAAGTTTGGGACGACCAGTGGATCTTCTGGGTCGGACCATTTGTGGGAGCACTAGCTGCAGCAGCATACCACCAGTACATACTGAGAGCAGCTGCCATCAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAACTAA 597 53.94 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCLGAICGVGLVKAFMKSFYNSLGGGANSVAAGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKVWDDQWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1760910 1762467 + Vvi3g172 Vvi3g172 783847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g172 198 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 TIGRFAM MIP: MIP family channel proteins 2 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 198 - -
Vvi3g172 198 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 198 IPR034294 -
Vvi3g172 198 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi3g172 198 SUPERFAMILY Aquaporin-like 2 182 IPR023271 -
Vvi3g172 198 Gene3D Glycerol uptake facilitator protein. 1 198 IPR023271 -
Vvi3g172 198 ProSitePatterns MIP family signature. 16 24 IPR022357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g172 K09872 - vvi:100233027 398.282