Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g177 ATGTATTTTTTTTTTATAAAAAAAAGAAGAAGATATTTTTGGTTTTGGTACATCATCGATTCAATACATACTGAAGAACGAGACCAATCATGTTGTCCCAAAGCCGTTCAGGAGACAGCTCTCTCGCTTCATCTTTTTCCTCCTCTTTTCGAATCGCTGGTTTTCAAGATGAGAATCAATCAACAAGATGGTGTTTCCCAAGTTGATGAACCTAGCACTAGTGTGCATGATAACACTACTTTGGACCAAGGTGATGCGACAGTAAATGGTATTCTTTCTGATTCAAATGCCATTTATGAGAGCAACGAAGCCACCAAAATGCCAGATGTTGCCAAGGAGACTCTTAATATCCCTTGCATTTATAGACAAGACGTTGTTAGGAGCAACGAAGTTGGCATGATAGGAATTGTGTCTGAAGTTGCTGGTGACTCGGATTCGGATAGCAGCATTACTGATGATGAAGAAGAAGAAGATGATGACAACGATGAAGATGAAACTGGTGGAAATGAAGAAGGTGACAACCATGGCAATACCAATGCGAGTAGTGATGGGAATAGAAGTGGTGGTAACTATAAGAGCAGTCCTCTCCCAGATGATCAGGTTCGAGTACTTTGGATGGATGACTCTGAGACAACCGAAAATCTTAATGATGTGACTGTAATTGATAGGGGATTCATGCATGGGGATTATGTTGCTTCTGCTTCAGACCCTACTGGACAAGTAGGTGTTGTGGTGGATGTCAATATCTCCATTGATTTGTTACCCATTGATGGAACTATTATAGAACAAGTCTCATCCAGAGACCTGAAACGTGTAAGGGATTTTGCTGTGGGTGATTATGTAGTTCTTGGGCCCTGGCTGGGTAGAATTGATGATGTGTTGGATAATGTGACTGTGTCATTTGATGATGGTTCCGTGTGTAAAGTTATGAAGGCTGACCCACTGCGTCTTAAACCAGTTACAAAGAATATTCTTGAAGATGGACATTTTCCATACTACCCTGGTCAGCGGGTAAGAGCACGTTCTTCATCAGTTTTCAAGAATTCTAGGTGGCTATCTGGATTGTGGAAAGCTAACCGGTTGGAAGGTACCGTTACTAAAGTTACAGTTGGGTCAGTGTTTATATATTGGATAGCATCTGCTGGCTATGGGCCTGATTCTTCTACCACCCCAGCTGAAGAGCAGAATCCAAAGAATTTAAAACTGCTGTCTTGTTTTGCACATGCAAATTGGCAAGTGGGTGACTGGTGTCTTCTTCCATCATTAGCACTATCATCCTCCATCACCCAGGACAAGGGCCAATCTGAATTAGAACCTCATGATTCTACTCGGAAAAAGGAGGACAATTATGAAAAAGCACTTTTGATTGTGAATACAAGGACTAGAGTTGATGTTTCATGGCAAGATGGAACAACAGCACGTGGACTGCCATCAACTACTTTGATTCCAATTGATAGTCCTGGTGATCATGAATTTGTTTCTGAACAGTATGTGGTGGAGAAGGCCTCTGATGAGAGTGATGATGCTTCTGAAGTTAGGCGTGTTGGTGTTGTGAAAAGTGTTAATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAGCCAGTTGTCAGGGCCGAAGATCCTCGAGAGTTTGATAGGGAGGAAGTTGTAAGCGTCTATGAGCTTGAGGGGCATCTGGACTATGATTATTGTTATGGGGACGTAGTTGTTCGGTTGTCCCCAGTTAAACAAGATCTGAACAATAACTCTGGATGTAAGAAAGTGGAGGATGAATCTGCAGATGGAGCTTGTATGGACTTCTCAGATCTCTCTTGGGTTGGGAATATAACTGGTCTTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACGGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAATTGCTGGTGGGAGTGAAGTTAGTGATGATGCTGCTAGTTGGGAAACTGTAAATGATGATGAAATGGATGCCCTTGAGAATGCTAAAGAGGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCACACAACTGTTGAAGATAACAATCCTGGGAGAAATGGGGCATTATCTCTTCCATTAGCTGCCCTGGGGTTTGTTACCAGACTGGCTACTGGCATATTCTCACGGGGAAGGAAACATGTAGAACCACCTTCTTCGGATTCTGAAGGTGAAAATGAACTCCAATCACAAGGAGCAATTAAGCCTTCTCAGATAAAGGTTTCGCATGATGAGACTAACTCTCCAAATAATGTCATTGACAATTTTGGTCTGCAAACTACTCATGAAAAAGAAGAGGAGCATGTTGGGGTTGAGGTTACTGATTCTTTGGATATGGCTGAGGCCTTAGTGAATCTAAGGGCCAACGACCCAGATGCTCTAGCATGCCATGAGTATGAATCGTGCAGTTTCAAACGCTTTGATATTGCTAAAGATCCTTTGGACCATTATTTTATTGGTGCAAGTGGGCAGAATAGCAATGGGAGGAAGTGGCTCAAGAAGGTTCAGCAAGATTGGAGCATCCTTCAGAATAACCTGCCTGATGGGATCTATGTGCGAGTGTATGAAGATCGAATGGATCTCCTAAGGGCTGTGATAGCCGGGGCATATGGAACTCCTTACCAAGATGGTCTCTTCTTCTTTGATTTTCACCTTCCACCAGAGTACCCTGATGTTCCACCGTCAGCATACTATCATTCTGGTGGGTGGCGGATAAACCCAAATCTGTACGAGGAAGGCAAGGTGTGTCTTAGCCTTTTAAACACCTGGACTGGCAGAGGAAATGAAGTATGGGATCCAGTGTCCTCAAGCATCCTTCAAGTCCTAGTTTCACTCCAGGGATTGGTGCTAAACTCGAAGCCATATTTTAATGAAGCCGGCTATGACAAGCAAATAGGGACTGCTGAAGGAGAGAAAAATTCATTGTCCTACAATGAGAACACTTTCTTGCTAAATTGCAAAACTATGATGTATCTCATGCGGAAACCCCCCAAGGACTTCGAAGAGCTTGTCAAAGACCATTTCAAGAGGCAGGGCTATTACATTCTCAAGGCCTGTGATGCATACATGAAAGGCTACTTAATTGGCTCTCTCTCAAAGGATGCCTCTACAAGTGATAGAAGCAATACAAATTCTACATCGGTTGGTTTCAAATTGATGTTAACTAAGATTGCACCGAGGCTCTTCTTGGCACTAAATGAAGTTGGAGCTGATTGTCAAGAATTCAAGCATCTGCAACAGTCATAG 3297 42.89 MYFFFIKKRRRYFWFWYIIDSIHTEERDQSCCPKAVQETALSLHLFPPLFESLVFKMRINQQDGVSQVDEPSTSVHDNTTLDQGDATVNGILSDSNAIYESNEATKMPDVAKETLNIPCIYRQDVVRSNEVGMIGIVSEVAGDSDSDSSITDDEEEEDDDNDEDETGGNEEGDNHGNTNASSDGNRSGGNYKSSPLPDDQVRVLWMDDSETTENLNDVTVIDRGFMHGDYVASASDPTGQVGVVVDVNISIDLLPIDGTIIEQVSSRDLKRVRDFAVGDYVVLGPWLGRIDDVLDNVTVSFDDGSVCKVMKADPLRLKPVTKNILEDGHFPYYPGQRVRARSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQNPKNLKLLSCFAHANWQVGDWCLLPSLALSSSITQDKGQSELEPHDSTRKKEDNYEKALLIVNTRTRVDVSWQDGTTARGLPSTTLIPIDSPGDHEFVSEQYVVEKASDESDDASEVRRVGVVKSVNAKERTACVRWLKPVVRAEDPREFDREEVVSVYELEGHLDYDYCYGDVVVRLSPVKQDLNNNSGCKKVEDESADGACMDFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAVYVVGRDDDDESIAGGSEVSDDAASWETVNDDEMDALENAKEEIGLPNTADTDPETEEHTTVEDNNPGRNGALSLPLAALGFVTRLATGIFSRGRKHVEPPSSDSEGENELQSQGAIKPSQIKVSHDETNSPNNVIDNFGLQTTHEKEEEHVGVEVTDSLDMAEALVNLRANDPDALACHEYESCSFKRFDIAKDPLDHYFIGASGQNSNGRKWLKKVQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIAGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPVSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEELVKDHFKRQGYYILKACDAYMKGYLIGSLSKDASTSDRSNTNSTSVGFKLMLTKIAPRLFLALNEVGADCQEFKHLQQS* 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1786699 1794856 - Vvi3g177 Vvi3g177 783852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g177 1098 SMART ubc_7 850 1007 - -
Vvi3g177 1098 MobiDBLite consensus disorder prediction 137 198 - -
Vvi3g177 1098 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 109 439 - -
Vvi3g177 1098 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 443 1097 - -
Vvi3g177 1098 Coils Coil 657 677 - -
Vvi3g177 1098 Gene3D Ubiquitin Conjugating Enzyme 810 1078 IPR016135 -
Vvi3g177 1098 MobiDBLite consensus disorder prediction 146 169 - -
Vvi3g177 1098 CDD UBCc 850 1000 IPR000608 -
Vvi3g177 1098 MobiDBLite consensus disorder prediction 172 194 - -
Vvi3g177 1098 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 109 439 - -
Vvi3g177 1098 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 443 1097 - -
Vvi3g177 1098 Pfam Ubiquitin-conjugating enzyme 852 996 IPR000608 -
Vvi3g177 1098 MobiDBLite consensus disorder prediction 728 750 - -
Vvi3g177 1098 SUPERFAMILY UBC-like 831 1014 IPR016135 -
Vvi3g177 1098 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 847 1007 IPR000608 -
Vvi3g177 1098 MobiDBLite consensus disorder prediction 675 704 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g177 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - vvi:100258896 1296.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41