Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g18 ATGAAGATTCAGTGTAGTTTTTGTAGTAAAGAAGAGGCCTCTGTTTTCTGTACTGCAGACGAAGCACCCCTTTGTGATATCTGCGACCGTCAGGTCCACCATGCAAACAAGCTTGCCGGAAAGCACAAGCGCTACTCCCTCCTCCGCCCTTCCGACAAGGACTTCCCTTCCTGTGACCTTTGCCAAGATAAGCGTGCCTTTCTTTTCTGTAAAGAAGATAGAGCAATTCTCTGTAGAGAATGCGATGTTTCAATTCACAAGGCCAATGAGCACACCCGGAAACACTACAGGTTCCTTCTCACAGGTGTGAAGCTTTCCGCTTCTGCTTCTGAGTACCCAATCTCAGCGTCATCTTCATCGCCCTCCACCATTGATTCCGAGACCAAACCCTCTAAATCATCAACAAAAAGACCCACTTCAAGGGATCATGACAATCAAAGTATCTCTGAGTACTTGATGGAGACGCTACCAGGATGGCGGGTGGACGATTTTCTTGATCCTTCTTCTGGTTTCAGTGAGTTTCCGGATCATGGCGTTGGAACCCATCTGAGCTCGTTTCCATATGAGGATTTCGCCGTCTGGGTACCTCAAGATACACCTCAGTTCAATCACCTTCCTCTCTACATTCCTCAGACAGGTGGGGGAAATGGACTCAAGGCCTCTGAGGAAGCGAACACGGTGAAAGTTAGCCGGAAAAGGATTGACGATGGGTTTACAGTTCCTGAAATCAGCACTCTACCTCTCAAGAAATCAAGAAATCTTTGGTAG 768 47.53 MKIQCSFCSKEEASVFCTADEAPLCDICDRQVHHANKLAGKHKRYSLLRPSDKDFPSCDLCQDKRAFLFCKEDRAILCRECDVSIHKANEHTRKHYRFLLTGVKLSASASEYPISASSSSPSTIDSETKPSKSSTKRPTSRDHDNQSISEYLMETLPGWRVDDFLDPSSGFSEFPDHGVGTHLSSFPYEDFAVWVPQDTPQFNHLPLYIPQTGGGNGLKASEEANTVKVSRKRIDDGFTVPEISTLPLKKSRNLW* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 310968 312061 + Vvi3g18 Vvi3g18 783693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g18 255 MobiDBLite consensus disorder prediction 130 147 - -
Vvi3g18 255 MobiDBLite consensus disorder prediction 113 147 - -
Vvi3g18 255 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi3g18 255 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Vvi3g18 255 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi3g18 255 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 253 - -
Vvi3g18 255 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 253 - -
Vvi3g18 255 CDD Bbox1_BBX-like 5 47 - -
Vvi3g18 255 CDD Bbox1_BBX-like 58 100 - -
Vvi3g18 255 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi3g18 255 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vvi3g18 255 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi3g18 255 MobiDBLite consensus disorder prediction 113 129 - -
Vvi3g18 255 Gene3D Classic Zinc Finger 1 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g18 - - - vvi:100241912 473.396
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g18 Vvi18g1041 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g959 . 88 439 C2C2-CO-like Transcription Factor Family AT5G15850 57.1 3.8e-65 245.7
Vvi14g959 . 71 439 C2C2-CO-like Transcription Factor Family AT3G02380 58.8 5.1e-75 278.5
Vvi4g625 . 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 1.1e-72 270.8
Vvi12g737 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 9.6e-96 347.4
Vvi12g737 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.5e-91 332.8
Vvi12g737 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.5e-91 332.8
Vvi18g1041 ECH 1 299 C2C2-CO-like Transcription Factor Family AT1G75540 51.4 2.3e-80 296.2
Vvi19g32 . 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 3.3e-76 282.3
Vvi3g45 ECH 1 196 C2C2-CO-like Transcription Factor Family AT2G21320 58.6 2.6e-59 225.3
Vvi4g1083 ECH 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 5.5e-54 207.6
Vvi3g45 ECH 1 211 C2C2-CO-like Transcription Factor Family AT4G38960 63.0 2.2e-69 258.8
Vvi4g1083 ECH 1 182 C2C2-CO-like Transcription Factor Family AT4G38960 63.7 4.6e-59 224.6
Vvi3g18 ECH 1 169 C2C2-CO-like Transcription Factor Family AT4G39070 52.2 1.0e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14639 PF00643 zf-B_box 1.10E-07 No_clan Vvi TF