Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g18 ATGAAGATTCAGTGTAGTTTTTGTAGTAAAGAAGAGGCCTCTGTTTTCTGTACTGCAGACGAAGCACCCCTTTGTGATATCTGCGACCGTCAGGTCCACCATGCAAACAAGCTTGCCGGAAAGCACAAGCGCTACTCCCTCCTCCGCCCTTCCGACAAGGACTTCCCTTCCTGTGACCTTTGCCAAGATAAGCGTGCCTTTCTTTTCTGTAAAGAAGATAGAGCAATTCTCTGTAGAGAATGCGATGTTTCAATTCACAAGGCCAATGAGCACACCCGGAAACACTACAGGTTCCTTCTCACAGGTGTGAAGCTTTCCGCTTCTGCTTCTGAGTACCCAATCTCAGCGTCATCTTCATCGCCCTCCACCATTGATTCCGAGACCAAACCCTCTAAATCATCAACAAAAAGACCCACTTCAAGGGATCATGACAATCAAAGTATCTCTGAGTACTTGATGGAGACGCTACCAGGATGGCGGGTGGACGATTTTCTTGATCCTTCTTCTGGTTTCAGTGAGTTTCCGGATCATGGCGTTGGAACCCATCTGAGCTCGTTTCCATATGAGGATTTCGCCGTCTGGGTACCTCAAGATACACCTCAGTTCAATCACCTTCCTCTCTACATTCCTCAGACAGGTGGGGGAAATGGACTCAAGGCCTCTGAGGAAGCGAACACGGTGAAAGTTAGCCGGAAAAGGATTGACGATGGGTTTACAGTTCCTGAAATCAGCACTCTACCTCTCAAGAAATCAAGAAATCTTTGGTAG 768 47.53 MKIQCSFCSKEEASVFCTADEAPLCDICDRQVHHANKLAGKHKRYSLLRPSDKDFPSCDLCQDKRAFLFCKEDRAILCRECDVSIHKANEHTRKHYRFLLTGVKLSASASEYPISASSSSPSTIDSETKPSKSSTKRPTSRDHDNQSISEYLMETLPGWRVDDFLDPSSGFSEFPDHGVGTHLSSFPYEDFAVWVPQDTPQFNHLPLYIPQTGGGNGLKASEEANTVKVSRKRIDDGFTVPEISTLPLKKSRNLW* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 310968 312061 + Vvi3g18 Vvi3g18 783693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g18 255 MobiDBLite consensus disorder prediction 130 147 - -
Vvi3g18 255 MobiDBLite consensus disorder prediction 113 147 - -
Vvi3g18 255 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi3g18 255 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Vvi3g18 255 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi3g18 255 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 253 - -
Vvi3g18 255 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 253 - -
Vvi3g18 255 CDD Bbox1_BBX-like 5 47 - -
Vvi3g18 255 CDD Bbox1_BBX-like 58 100 - -
Vvi3g18 255 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi3g18 255 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vvi3g18 255 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi3g18 255 MobiDBLite consensus disorder prediction 113 129 - -
Vvi3g18 255 Gene3D Classic Zinc Finger 1 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g18 Vvi18g1041 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14639 PF00643 zf-B_box 1.10E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g18 - - vvi:100241912 473.396