Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g183 ATGAATCATCAAGTTGGGTTAATTTTGAGATTTCCATTGTCTTGCAGGCGACATAAAGATAAAAAGGAAGAAGTGGCAGAGCCAGAGGCTGATCCTGAACGGGATCAGAGGACCGTGTTTGCTTATCAGATTTGTTTGAAGGCGGATGAAAGGGATGTCTATGAATTCTTCTCGAGAGCTGGCAAGGTACGAGATGTGAGGCTTATTATGGACCGCAATTCAAGACGTTCCAAGGGAGTTGGATATATTGAATTTTATGATGCAATGTCAGTTCCCATGGCAATAGCACTCTCTGGTCAGCCTCTCCTTGGTCAACCGGTGATGGTCAAGCCATCAGAAGCTGAAAAGAATCTGGTTCAGTCAACTACAGCTGCAGCTGGTGGACCTGGAGGGCTTATAGGGCCCTATTCAGGGGGGGCTAGAAGGCTGTATGTCGGGAATTTGCATTTCAACATTACAGAAGATCAACTTCGGCAGGTATTTGAACCGTTTGGTACTGTAGAACTTGTGCAACTGCCTACTGATCTGGAGACTGGACATTGCAAAGGTTTTGGTTTTGTGCAGTTTGCACGTCTAGAAGATGCTAGAGCTGCACAAAGTTTAAATGGACAATTGGACATTGCTGGGCGGACAATCAAGGTTTCAGTGGTTACTGATCAAGCAGGATTGCAAGATATTGGTGCAAATGCAGGTGATTTTGACGATGATGAAGGTGGTGGTTTGTCCCTGAATGCTCGTTCTAGAGCAATTCTCATGCAGAAGTTGGATCGCAGTGGCACCACTCCAGGCATTGCTGGTTCACTTGGCTCCCCTGTGCTTAATAACCCTGGCCTTCCTCTATCAACAGCCCCTATTCTTGGTGCTGCACCTGTAGTGTCGCCTCTTGTTGCTCCTCTTGTACAGGCCCCGGTTCCTGGACTTGCAGGATTGCCAGGTGCTGGTCTTCAAGTTCCAGCTGTTACTGTTCCTTCCATTGACACTATTGGTGTCCCCAGCGAATGTTTGATGTTAAAGAATATGTTTGATCCCAAATTAGAGACGGAGCCAGATTTTGATCTGGACATTAAAGAAGATGTTCAAGATGAATGCTCTAAGTTTGGAACAGTGAAGCATATCTATGTAGACAAGAATAGTGCTGGTTTTGTATTCTTGCGATTTGAAAACACACAAGCTGCAATAAGTGCACAACGTGCCCTACATGGTAGATGGTTTGCTGGGAAGATGATCACTGCAACATTCATGCTGCCCCAGAACTACGAGGCTAAATTCCCGGATAGCAGATAG 1284 45.79 MNHQVGLILRFPLSCRRHKDKKEEVAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGGPGGLIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPTDLETGHCKGFGFVQFARLEDARAAQSLNGQLDIAGRTIKVSVVTDQAGLQDIGANAGDFDDDEGGGLSLNARSRAILMQKLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVSPLVAPLVQAPVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDLDIKEDVQDECSKFGTVKHIYVDKNSAGFVFLRFENTQAAISAQRALHGRWFAGKMITATFMLPQNYEAKFPDSR* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1824919 1835490 - Vvi3g183 Vvi3g183 783858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g183 427 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 233 351 IPR029123 -
Vvi3g183 427 Gene3D - 137 227 IPR012677 -
Vvi3g183 427 PANTHER RNA-BINDING PROTEIN 39 ISOFORM X1 16 424 - -
Vvi3g183 427 CDD RRM1_RBM39_like 38 110 - -
Vvi3g183 427 Gene3D - 14 123 IPR012677 -
Vvi3g183 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 416 IPR000504 GO:0003723
Vvi3g183 427 SUPERFAMILY RNA-binding domain, RBD 31 139 IPR035979 GO:0003676
Vvi3g183 427 SMART rrm2_1 339 412 IPR003954 GO:0003676
Vvi3g183 427 SMART rrm2_1 142 215 IPR003954 GO:0003676
Vvi3g183 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 114 IPR000504 GO:0003723
Vvi3g183 427 TIGRFAM SF-CC1: splicing factor, CC1-like family 16 425 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vvi3g183 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 409 IPR000504 GO:0003723
Vvi3g183 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 106 IPR000504 GO:0003723
Vvi3g183 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Vvi3g183 427 PANTHER TRANSFORMER-2-RELATED 16 424 - -
Vvi3g183 427 CDD RRM3_RBM39_like 332 414 - -
Vvi3g183 427 CDD RRM2_RBM23_RBM39 143 215 - -
Vvi3g183 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Vvi3g183 427 Gene3D - 328 427 IPR012677 -
Vvi3g183 427 SMART rrm1_1 38 110 IPR000504 GO:0003723
Vvi3g183 427 SMART rrm1_1 142 215 IPR000504 GO:0003723
Vvi3g183 427 SMART rrm1_1 334 412 IPR000504 GO:0003723
Vvi3g183 427 SUPERFAMILY RNA-binding domain, RBD 141 419 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g183 K13091 RBM23_39; RNA-binding protein 23/39 - vvi:100253813 777.319
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g183 Vvi7g1196 ECH
Vvi3g183 Vvi7g1168 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65