Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g187 ATGTTATCAGGGTTGATGAACTTTTTGAGGGCCTGTTTTCGGCCAGGGTCGGATCGATATGTTCACACGGGTTCGGACGCTGGTGGTCGCCAGGATGGGCTCCTGTGGTACAAAGATTCTGGGCAGCACTCTAGTGGTGAATTCTCGATGGCTGTTATTCAGGCCAACAATTTACTTGAAGATCATAGCCAGATTGAGTCAGGCAGTTTGAGCTCACATGAGTCTGGCCCTTATGGTACCTTTGTTGGAATTTATGATGGGCATGGTGGACCCGAGACGGCCCGGTACATCAATGATCACCTCTTCCATCATCTCAAGAGGTTTACTTCAGAGCAGCAATCCATGTCAACGGATGTAATACGCAAGGCTTTTCAAGCAACAGAAGAGGGGTTTATCTCTCTTGTTGCTAGACAGTGGTCCATCAGACCACAGCTTGCAGCAGTCGGATCATGCTGCCTGGTTGGTGTTATTTGTGGTGGGAATCTTCACATCGCCAACCTTGGCGATTCCCGTGCGGTTTTGGGGAGACTTGTGAAGGCAACTGGGGATGTTCTAGCCATTCAGCTGTCAGCTGAGCACAATGCTTGTATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGGGAGCCTTTAATTGCCAAGTTTCGCCTTCGTGAACCATTCAGAATGCCAATATTGAGCTCAGACCCAGCAATTTCAGTGCACCCACTCCAGCCACACGATCAGTTTGTTATATTTGCATCTGATGGGCTCTGGGAGCACCTTAGCAATCAGGAGGCAGTAGATATTGTTCAAAGTCACCCTCGCAATGGAAGTGCAAAGAGGCTGGTGAAAGCTGCTTTACAAGAAGCAGCAAAAAAGAGAGAAATGAGGTATTCAGACCTGAAGAAGATTGACCGAGGGGTTCGTCGGCATTTCCATGATGACATCACAGTGATTGTTGTGTTTCTTGACTCAAATCTCGTGAGCAGGGCTAGCTCAGTCAAATGCTCTAATATCTCTGTGAGAGGAGGTGGGATCAACCTGCCTGCCAATACTCTTGCCCCTTTCGCTACCCCCACTGAAGCTGGCTCTACCTGA 1194 47.65 MLSGLMNFLRACFRPGSDRYVHTGSDAGGRQDGLLWYKDSGQHSSGEFSMAVIQANNLLEDHSQIESGSLSSHESGPYGTFVGIYDGHGGPETARYINDHLFHHLKRFTSEQQSMSTDVIRKAFQATEEGFISLVARQWSIRPQLAAVGSCCLVGVICGGNLHIANLGDSRAVLGRLVKATGDVLAIQLSAEHNACIESVRQELHSLHPDDNQIVVLKHNVWRVRGLIQITRSIGDVYLKKAEFNREPLIAKFRLREPFRMPILSSDPAISVHPLQPHDQFVIFASDGLWEHLSNQEAVDIVQSHPRNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSVKCSNISVRGGGINLPANTLAPFATPTEAGST* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1872347 1877380 + Vvi3g187 Vvi3g187 783862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g187 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Vvi3g187 397 SMART PP2C_4 39 353 IPR001932 -
Vvi3g187 397 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Vvi3g187 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Vvi3g187 397 Pfam Protein phosphatase 2C 74 325 IPR001932 -
Vvi3g187 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Vvi3g187 397 Gene3D - 36 366 IPR036457 -
Vvi3g187 397 CDD PP2Cc 48 355 IPR001932 -
Vvi3g187 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g187 - K01102 vvi:100248713 797.734