Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g190 ATGTTGGGCTGTTGGAGGGTAACGCCTTGCCTCTCCAGTGAGTACACAAGTGGGTTTTGCTGCAGGGCAAATAATCTGCAGACCCATGTCAATGGAGTCGAGAACAAGAAGAAGAAGAAGGTGGTTGTAGTTGGGTCTGGCTGGGCTGGACTTGGTGCTGCTCATCACCTCTGTAAGCAGGGCTTTGAAGTCACAGTCCTTGAAGGTGGCAATGATCCTGAATCCAGGAAAATGCTGATTCCTGATGATGTCGGTATTCATGGTTTCTGGTACCCCTATCGTAATATATTTAGCCTGGTTGATGAGCTGGATATCAAGCCCTTCACAAACTGGACAAGTTCTGCCCACTATTCAGGAGAGGGATTGGAGGTTGAATTTCCAATATTCCAAGATCTAACTCAACTACCGACTCCATTAGGAACGTTATTCTACACCCAATTTGTCCGGCTTCCATTACTGGATCGATTATCATCCCTTCCTCTAATGGCTGCAGTTGTTGACTTCGACAACACTGACACTGCTTGGAGGAAATATGATTCAATTACTGCAAGGGAGCTTTTCAGACAGTTTGGCTTCTCACAGAGGCTCTATCAGGACGTTTTTGATCCATTACTTCAAGTAGGTCTCTTTGCTCCAGCAGAGCAATGCAGTGCAGCTGCTACTCTGGGAATACTATACTATATTGTTCTTGCACACCAGAAAGATTTCGATTTTGTATGGTGTCGTGGAACAGTCAGAGACAAGATTTTCAAGCCATGGATGGACTACATGAGAGCTAATGGTTGTGAATTTCTAGAGAGCAGAAGAGTGACAGATTTCTTATTTAATGAGGAAACAGGATGCATTTCAGAAGTAGTTTGTGGCAGAGAGAAGTACACAGCCGATGCACCCGTGATAATGTTTTCGACAAGCTTGATGGAGAATCACTCATTGACTCTCCTTGCAGCATTAAGTACAAGGGAGGAGTTTTTGAAAGTTCTAAACTTGGCTGGAATTGATGTTCTCACTGTTAAGCTCCAGTTTGATCGAAAGGTTAACATTCCAAAAGCAGTTAATACTTGCTCTGGTTTTGATGATTCATGTGGCTGGACTTACTTTGACCTGAATGCAATCCATGACGAGTATAAAGATGATCCAGTGACAGTCTTACAAGCTAATTTTTATCATGCAAATGAGTTGCTGCTGCTGAAAGATGAGCTCATAGCTGCAAAAGTGATGCATCAGCTTTCAAAGTACATCAAGGACTTGGAGAACGCTTCAGTTGTTGGTCAGGAGATTGAAAGATTTCCAAAGTCTTTGACTCACTTTTTTCCAGGTTCATACAAATACATGATGCGTGGATCGACATCTTTTCCAAACTTGTTCATGGCGGGGGATTGGATCGTAACCCGACATGGTTCATGGCTTCAGGAGAAATCATATGTGACCGGACTTGAAGCAGCTAACAGGGTTGTGGACTACCTGGAGGAAGGGAGTTTTGCTAAGATAATACCGGTGGAAGAAGACGAACCCCACATTCAAGCTCTTCGAAACCTTAACAGAAACCTTAATGATGTAAAAGCTCAGCTGCCATGGTCTGATTATTTCCTCCCTTGA 1596 43.48 MLGCWRVTPCLSSEYTSGFCCRANNLQTHVNGVENKKKKKVVVVGSGWAGLGAAHHLCKQGFEVTVLEGGNDPESRKMLIPDDVGIHGFWYPYRNIFSLVDELDIKPFTNWTSSAHYSGEGLEVEFPIFQDLTQLPTPLGTLFYTQFVRLPLLDRLSSLPLMAAVVDFDNTDTAWRKYDSITARELFRQFGFSQRLYQDVFDPLLQVGLFAPAEQCSAAATLGILYYIVLAHQKDFDFVWCRGTVRDKIFKPWMDYMRANGCEFLESRRVTDFLFNEETGCISEVVCGREKYTADAPVIMFSTSLMENHSLTLLAALSTREEFLKVLNLAGIDVLTVKLQFDRKVNIPKAVNTCSGFDDSCGWTYFDLNAIHDEYKDDPVTVLQANFYHANELLLLKDELIAAKVMHQLSKYIKDLENASVVGQEIERFPKSLTHFFPGSYKYMMRGSTSFPNLFMAGDWIVTRHGSWLQEKSYVTGLEAANRVVDYLEEGSFAKIIPVEEDEPHIQALRNLNRNLNDVKAQLPWSDYFLP* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1897678 1903139 + Vvi3g190 Vvi3g190 783865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g190 531 Gene3D - 33 493 IPR036188 -
Vvi3g190 531 SUPERFAMILY FAD/NAD(P)-binding domain 36 488 IPR036188 -
Vvi3g190 531 PANTHER PROTOPORPHYRINOGEN OXIDASE 35 507 - -
Vvi3g190 531 Pfam Flavin containing amine oxidoreductase 49 484 IPR002937 GO:0016491
Vvi3g190 531 PANTHER OS04G0560500 PROTEIN 35 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g190 - - - vvi:100260621 1041.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30