Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g191 ATGTTTACAAGACGACTGTTTTTGAAGGGGCAAAATTCTTTTGATGAAGGGAATGGAAGGGAAATTGAGATTGAAAGAATTAACTTACATGATGCAATTGGGGAGAAACTAAAGGTGGCTGCAGAGAAGGAGATATATACGGACTTTGCAGAAGCCAAGATTCCAGCATTCATAGATTACCTGGGAACTGTTGTTGAGGAGATGGAAGAGGACATGTTCTGCTACATTCATGAAGGCGGTCAGCTAGTTAAATGTGCTGGAGGGTCTGTAGAATATCAGGGTGGTCGTACCGAATCCATGGTTGTTAGCCGGCATATGTCACATAGTGATTTCATTTCAAAACTGTGTGATGAATTGCATTTTGACCGGAATTCTATCAAATTGGAATTCACGGTCAAGTTTGACCCATCATGTCTACTATTGTTGCATGATGACGCAGCCATACTTAAGATGTTTCGATTCAATGAAAGGTTTTGTCGAGTATATGTCTCATCATCAAGTGAAGTTGTTGAAGCGTGTATATCATCGACTAGTGCCCCTACTCCTATTGTTGGTTCAAATTCAGCACACGTACTTTCCTCTGGTGGTGATATGCCAATTGATATTTGTAATGACTCTCTTACAATTGAGTCATGTGGGTTTTCCCAAAGATGTGCGGAATCAAATATACTCAAACGTGACTCAAGGCGATTTGAAAATTCCATTATGGGTAGTGGACATACCTTCCCCAATGCTGCCAAGTTCCGTGATGCCGTGTATTTGATGTCAATTGCTGGTAGATTCCGTTATTGCTTCAAGAGGAATAGTACGAAACACATGACAGTTGTTTGCACAGTTAATGAATGTCCTTGGAAAGTCACAGCTCGTGCAATTGGGGAATCGAACATCATTCAGGTTCACACTTTTCAAAACCGCCATAATCATAGTTTGGAAGATGTTGCCGCATGCCAACCTTTAGTGAGATCCAATCGTGCTTCATTGCTTATTGATGATGTCATACGGTCCACTCCCGATTACCAACCCCGCCAAATTTGTAAGGACTTTCAAAGGCAACATGGGATGCAATTGACGTATCTTCAAGCATGGAATATCAAGGAGAAGGCAAATGAGCGCATTTATGGAGAACCAAAAAATTATTACAAATTGTTGCCTTGGATGTGTGAGAAAATGGTTGCAACAAATCCGGGGAGCATTGTTGAGTTGAGACATTCAAGTGATGGGCATTTTGAGCAACTCTTTGTTGCTCATTCGATATCTATCCAAGGGTTTGCAATGGGGTGTCGGCCAATCATTGCTATTGACTCCGCGCATATGAGTGGGCCATATAGGGGTGCGTTATTTTCGGCCACCGCATACGATGCTAATGACTCTATGTTCCCCTTAGCCTTTGGCGTGATGAGCTTAGAAAATTATGATGATTGGTCTTGGTTTTTGCAAAACTTGAAGAAGGTTGTTGGAGATAAGGAAGTCGTTATTATCTCGGATAGACGTCCTGCTCTTCTTCGTAGTGTTCCCGAAGTGTTTGGCCTTGAAAACCATGCCTACTGTTACCGTCACTTGAAGGAAAATTTCAGCTCTTTTTTGAGCAAGCATAACACAAAAGGGAACAAAGGTAAAGAAAATGCACTCCAATTACTTGATAGTATTGCCTATGCAAGGTTAGAGCACGATTACAATGTTTCCATGTTTGAACTACGGAAATACAATGACACTTTGGCCACATGGGTTGAAGAAAATGCACCCGAACATTGGGCTATGTCAAAATTCCCAAAACAAAGATGGGATAAAATGACCACAAACCTTGCCGAGTCGTTTAATGCTTGGTTAAGGAATGAAAGACATCACTCCATTTATAACTTTCTAATGGAGCATATGGCTAAGTTAGGTTCTATGCTTGTCAAACATAAAGAGGAATCGAACAATTGGAAGGGATGTATAGGGCCAAAAATTGAAGACAAAGTGCAGCAGAAAATTGCCAAGGGTGAGGTGTATCCGGTCACTCCTTTAATGAACGGAACATTTGGGGTTTCTATCGGAAGCACCTTCTTGAATGTGGACATTATGAAGCGTACTTGCACATGTAGGGGTTGGGAAATGTTGGGAATCCCTTGTGAACATGCGGCGGCTGTTATTCTTTCCATCGGTCAGAATGTTGTTGATTTTGTTCAAGATTGGTACAAATTCCCAATGCAAGAGTTGATTTACTCGGGCTCCTTCTCCGGTATAGAGACCCATGACATGCCAATCGTGGATAATGATGGTTTGGTTCGATCTATCATCGGTGAAGTTTTCTTCTCTCTTAACCCTCCCCATACCAAATGCCCTCCCGGAAGACCAAGGAAGAAGCGCCTTGAGTCCCAATTTCAAGATAAACGGACTGTCTATTGCTCAAGATGTCATACTTCCGGGCACAACAGGAAAACGTGCAAGAATCCTTTGTCTTAA 2445 41.88 MFTRRLFLKGQNSFDEGNGREIEIERINLHDAIGEKLKVAAEKEIYTDFAEAKIPAFIDYLGTVVEEMEEDMFCYIHEGGQLVKCAGGSVEYQGGRTESMVVSRHMSHSDFISKLCDELHFDRNSIKLEFTVKFDPSCLLLLHDDAAILKMFRFNERFCRVYVSSSSEVVEACISSTSAPTPIVGSNSAHVLSSGGDMPIDICNDSLTIESCGFSQRCAESNILKRDSRRFENSIMGSGHTFPNAAKFRDAVYLMSIAGRFRYCFKRNSTKHMTVVCTVNECPWKVTARAIGESNIIQVHTFQNRHNHSLEDVAACQPLVRSNRASLLIDDVIRSTPDYQPRQICKDFQRQHGMQLTYLQAWNIKEKANERIYGEPKNYYKLLPWMCEKMVATNPGSIVELRHSSDGHFEQLFVAHSISIQGFAMGCRPIIAIDSAHMSGPYRGALFSATAYDANDSMFPLAFGVMSLENYDDWSWFLQNLKKVVGDKEVVIISDRRPALLRSVPEVFGLENHAYCYRHLKENFSSFLSKHNTKGNKGKENALQLLDSIAYARLEHDYNVSMFELRKYNDTLATWVEENAPEHWAMSKFPKQRWDKMTTNLAESFNAWLRNERHHSIYNFLMEHMAKLGSMLVKHKEESNNWKGCIGPKIEDKVQQKIAKGEVYPVTPLMNGTFGVSIGSTFLNVDIMKRTCTCRGWEMLGIPCEHAAAVILSIGQNVVDFVQDWYKFPMQELIYSGSFSGIETHDMPIVDNDGLVRSIIGEVFFSLNPPHTKCPPGRPRKKRLESQFQDKRTVYCSRCHTSGHNRKTCKNPLS* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1904171 1912587 + Vvi3g191 Vvi3g191 783866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g191 814 PANTHER OS09G0268600 PROTEIN 191 800 - -
Vvi3g191 814 ProSiteProfiles Zinc finger SWIM-type profile. 683 715 IPR007527 GO:0008270
Vvi3g191 814 Pfam MULE transposase domain 430 523 IPR018289 -
Vvi3g191 814 Pfam MuDR family transposase 235 297 IPR004332 -
Vvi3g191 814 Pfam SWIM zinc finger 685 714 IPR007527 GO:0008270
Vvi3g191 814 SMART 26again6 690 717 IPR006564 GO:0008270
Vvi3g191 814 PANTHER POLYPROTEIN, PUTATIVE-RELATED 191 800 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g191 - - - vvi:100255550 1539.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g191 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000299 1 13 2 0 0 7 0 6 7 5 4 6 5 0 6 6 7 3 1 8 5 10 4 4 1 2 5 12 6 3 139