Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g198 ATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTGTTGGTTGGCATGGAGTACAGAACTGTCTCTGGAGTCGCTGGGCCATTGGTTATCCTTGAGAAAGTCAAGGGACCCAAATATCAAGAGATTGTCAATATTCGTTTGGGAGATGGAACAACTCGACGTGGTCAAGTCCTAGAAGTTGATGGTGAGAAAGCAGTTGTGCAGGTTTTTGAAGGAACTTCTGGAATTGACAACAAATACACAACTGTTCAATTTACAGGGGAGGTTTTGAAAACTCCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAAGATCCCTCTTTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCTCAGATATGTCGGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGAGCCTATGACACCCGCAACATCTTCCAGTCCCTTGATCTGGCATGGACGCTGCTTCGGATTTTCCCCCGTGAGCTTCTCCACCGTATACCAGCAAAGACCCTCGACCAGTACTACAGTAGAGAAGCCTCAAACTAG 1467 44.99 MGVEQNNHDAEEGTLLVGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGSLLEDVEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSREASN* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1933535 1941032 + Vvi3g198 Vvi3g198 783873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g198 488 CDD V_A-ATPase_B 92 379 - -
Vvi3g198 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vvi3g198 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Vvi3g198 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Vvi3g198 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Vvi3g198 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 2 488 IPR022879 -
Vvi3g198 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Vvi3g198 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Vvi3g198 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Vvi3g198 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Vvi3g198 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 2 488 - -
Vvi3g198 488 Gene3D - 29 488 - -
Vvi3g198 488 PIRSF V-ATPsynth_beta/V-ATPase_B 12 488 IPR022879 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g198 K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B - vvi:100243574 963.755
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g198 Vvi18g170 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g198 . . . . . Bpe12g00130 . . Cmo19g00765 Cmo11g01753 . . . . Sed05g2251 Cpe04g00605 Cpe15g00607 Bhi05g01684 Tan02g0657 Cmetu10g1323 . . . . Cla02g00408 Cam02g0414 Cec02g0413 Cco02g0431 Clacu02g0417 Cmu02g0413 Cre02g0748 Cone12ag1245 . . . . Csa07g00121 . Cme01g01238 Blo04g00583 Blo13g00496 Bda15g01024 Bda14g00625 Bpe15g00802 . Bma03g00617 Bma08g00610 . . . Cma11g01365 Cma19g00752 . Car19g00587 . . . . . . . . . . . . . . . . Lsi11g01217 . Chy01g00662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g628 ECH 1 1001 Primary Pumps ATPases(2) AT1G10130 84.7 0.0e+00 1660.6
Vvi6g328 . 2 813 Primary Pumps ATPases(2) AT2G28520 82.5 0.0e+00 1361.7
Vvi3g14 ECH 13 817 Primary Pumps ATPases(2) AT2G28520 64.2 2.2e-302 1035.0
Vvi18g1033 ECH 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 1.7e-299 1025.4
Vvi3g14 ECH 1 823 Primary Pumps ATPases(2) AT2G21410 78.0 0.0e+00 1284.6
Vvi18g1033 ECH 1 807 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1207.6
Vvi6g328 . 8 818 Primary Pumps ATPases(2) AT2G21410 64.6 1.3e-307 1052.4
Vvi3g14 ECH 6 823 Primary Pumps ATPases(2) AT4G39080 78.6 0.0e+00 1278.1
Vvi18g1033 ECH 1 807 Primary Pumps ATPases(2) AT4G39080 75.0 0.0e+00 1200.3
Vvi6g328 . 8 819 Primary Pumps ATPases(2) AT4G39080 65.3 1.5e-306 1048.9
Vvi18g257 . 27 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.0e-61 230.7
Vvi18g1050 ECH 27 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.0e-61 230.7
Vvi3g52 ECH 27 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.0e-61 230.7
Vvi18g257 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 1.5e-66 249.6
Vvi3g52 ECH 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 1.5e-66 249.6
Vvi18g1050 ECH 4 165 Primary Pumps ATPases(2) AT1G75630 81.6 1.9e-66 249.2
Vvi18g257 . 1 165 Primary Pumps ATPases(2) AT2G16510 100.0 4.1e-75 277.7
Vvi3g52 ECH 1 165 Primary Pumps ATPases(2) AT2G16510 100.0 4.1e-75 277.7
Vvi18g1050 ECH 1 165 Primary Pumps ATPases(2) AT2G16510 99.4 9.2e-75 276.6
Vvi18g257 . 2 121 Primary Pumps ATPases(2) AT1G19910 99.2 4.8e-52 200.7
Vvi3g52 ECH 2 121 Primary Pumps ATPases(2) AT1G19910 99.2 4.8e-52 200.7
Vvi18g1050 ECH 2 121 Primary Pumps ATPases(2) AT1G19910 98.3 1.1e-51 199.5
Vvi4g414 . 5 173 Primary Pumps ATPases(2) AT2G25610 86.4 5.0e-71 264.6
Vvi9g460 . 5 175 Primary Pumps ATPases(2) AT2G25610 85.4 8.5e-71 263.8
Vvi18g257 . 27 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.4e-60 229.2
Vvi18g1050 ECH 27 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.4e-60 229.2
Vvi3g52 ECH 27 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.4e-60 229.2
Vvi4g414 . 3 173 Primary Pumps ATPases(2) AT4G32530 78.6 9.0e-75 276.9
Vvi9g460 . 2 175 Primary Pumps ATPases(2) AT4G32530 77.5 1.2e-74 276.6
Vvi8g649 ECH 1 931 Primary Pumps ATPases(2) AT1G07810 70.9 0.0e+00 1381.7
Vvi6g367 ECH 1 846 Primary Pumps ATPases(2) AT1G07810 74.4 0.0e+00 1275.4
Vvi15g651 . 1 777 Primary Pumps ATPases(2) AT1G07810 50.3 1.2e-255 880.2
Vvi8g649 ECH 1 931 Primary Pumps ATPases(2) AT1G07670 70.9 0.0e+00 1390.9
Vvi6g367 ECH 1 846 Primary Pumps ATPases(2) AT1G07670 74.9 0.0e+00 1288.1
Vvi15g651 . 1 777 Primary Pumps ATPases(2) AT1G07670 50.3 2.4e-256 882.5
Vvi18g628 ECH 1 1001 Primary Pumps ATPases(2) AT1G10130 84.7 0.0e+00 1660.6
Vvi8g649 ECH 24 912 Primary Pumps ATPases(2) AT4G00900 60.6 0.0e+00 1126.3
Vvi15g651 . 2 775 Primary Pumps ATPases(2) AT4G00900 60.0 0.0e+00 1115.9
Vvi6g367 ECH 22 832 Primary Pumps ATPases(2) AT4G00900 61.6 2.5e-298 1021.9
Vvi5g1028 . 1 126 Primary Pumps ATPases(2) AT4G02620 87.3 9.4e-59 223.0
Vvi18g170 ECH 24 504 Primary Pumps ATPases(2) AT1G76030 96.0 4.7e-268 920.2
Vvi3g198 ECH 6 489 Primary Pumps ATPases(2) AT1G76030 95.7 4.7e-268 920.2
Vvi8g572 ECH 1 111 Primary Pumps ATPases(2) AT3G01390 81.1 2.1e-38 155.2
Vvi14g1109 ECH 1 376 Primary Pumps ATPases(2) AT1G12840 82.4 3.4e-181 631.3
Vvi17g38 ECH 1 376 Primary Pumps ATPases(2) AT1G12840 81.1 1.2e-175 612.8
Vvi16g92 . 1 484 Primary Pumps ATPases(2) AT3G42050 75.0 2.3e-205 711.8
Vvi18g257 . 1 165 Primary Pumps ATPases(2) AT2G16510 100.0 4.1e-75 277.7
Vvi3g52 ECH 1 165 Primary Pumps ATPases(2) AT2G16510 100.0 4.1e-75 277.7
Vvi18g1050 ECH 1 165 Primary Pumps ATPases(2) AT2G16510 99.4 9.2e-75 276.6
Vvi18g170 ECH 16 504 Primary Pumps ATPases(2) AT4G38510 96.3 2.1e-271 931.4
Vvi3g198 ECH 1 489 Primary Pumps ATPases(2) AT4G38510 96.1 4.6e-271 930.2
Vvi2g94 . 1 183 Primary Pumps ATPases(2) AT1G64200 74.6 6.8e-69 257.3
Vvi8g46 . 1 166 Primary Pumps ATPases(2) AT1G64200 63.7 2.0e-52 202.6
Vvi18g170 ECH 24 504 Primary Pumps ATPases(2) AT1G20260 96.1 1.4e-267 918.7
Vvi3g198 ECH 9 489 Primary Pumps ATPases(2) AT1G20260 95.6 3.4e-266 914.1
Vvi6g328 . 2 813 Primary Pumps ATPases(2) AT2G28520 82.5 0.0e+00 1361.7
Vvi3g14 ECH 13 817 Primary Pumps ATPases(2) AT2G28520 64.2 2.2e-302 1035.0
Vvi18g1033 ECH 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 1.7e-299 1025.4
Vvi14g1489 . 1 306 Primary Pumps ATPases(2) AT3G28715 91.5 2.2e-163 572.0
Vvi2g94 . 1 231 Primary Pumps ATPases(2) AT4G11150 77.1 1.9e-94 342.4
Vvi8g46 . 1 213 Primary Pumps ATPases(2) AT4G11150 72.3 6.4e-82 300.8
Vvi9g1043 ECH 1 624 Primary Pumps ATPases(2) AT1G78900 94.1 0.0e+00 1181.4
Vvi4g215 ECH 1 624 Primary Pumps ATPases(2) AT1G78900 92.8 0.0e+00 1156.4
Vvi18g170 ECH 24 504 Primary Pumps ATPases(2) AT1G76030 96.0 4.7e-268 920.2
Vvi3g198 ECH 6 489 Primary Pumps ATPases(2) AT1G76030 95.7 4.7e-268 920.2
Vvi18g170 ECH 16 504 Primary Pumps ATPases(2) AT4G38510 96.3 2.1e-271 931.4
Vvi3g198 ECH 1 489 Primary Pumps ATPases(2) AT4G38510 96.1 4.6e-271 930.2
Vvi18g170 ECH 24 504 Primary Pumps ATPases(2) AT1G20260 96.1 1.4e-267 918.7
Vvi3g198 ECH 9 489 Primary Pumps ATPases(2) AT1G20260 95.6 3.4e-266 914.1
Vvi14g1109 ECH 1 376 Primary Pumps ATPases(2) AT1G12840 82.4 3.4e-181 631.3
Vvi17g38 ECH 1 376 Primary Pumps ATPases(2) AT1G12840 81.1 1.2e-175 612.8
Vvi2g94 . 1 231 Primary Pumps ATPases(2) AT4G11150 77.1 1.9e-94 342.4
Vvi8g46 . 1 213 Primary Pumps ATPases(2) AT4G11150 72.3 6.4e-82 300.8
Vvi2g94 . 1 226 Primary Pumps ATPases(2) AT3G08560 68.9 4.7e-80 294.7
Vvi8g46 . 1 208 Primary Pumps ATPases(2) AT3G08560 68.0 1.3e-74 276.6
Vvi2g94 . 1 183 Primary Pumps ATPases(2) AT1G64200 74.6 6.8e-69 257.3
Vvi8g46 . 1 166 Primary Pumps ATPases(2) AT1G64200 63.7 2.0e-52 202.6
Vvi5g1028 . 1 126 Primary Pumps ATPases(2) AT4G02620 87.3 9.4e-59 223.0
Vvi8g572 ECH 1 111 Primary Pumps ATPases(2) AT3G01390 81.1 2.1e-38 155.2
Vvi16g92 . 1 484 Primary Pumps ATPases(2) AT3G42050 75.0 2.3e-205 711.8
Vvi6g328 . 2 813 Primary Pumps ATPases(2) AT2G28520 82.5 0.0e+00 1361.7
Vvi3g14 ECH 13 817 Primary Pumps ATPases(2) AT2G28520 64.2 2.2e-302 1035.0
Vvi18g1033 ECH 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 1.7e-299 1025.4
Vvi3g14 ECH 1 823 Primary Pumps ATPases(2) AT2G21410 78.0 0.0e+00 1284.6
Vvi18g1033 ECH 1 807 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1207.6
Vvi6g328 . 8 818 Primary Pumps ATPases(2) AT2G21410 64.6 1.3e-307 1052.4
Vvi3g14 ECH 6 823 Primary Pumps ATPases(2) AT4G39080 78.6 0.0e+00 1278.1
Vvi18g1033 ECH 1 807 Primary Pumps ATPases(2) AT4G39080 75.0 0.0e+00 1200.3
Vvi6g328 . 8 819 Primary Pumps ATPases(2) AT4G39080 65.3 1.5e-306 1048.9
Vvi18g257 . 27 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.0e-61 230.7
Vvi18g1050 ECH 27 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.0e-61 230.7
Vvi3g52 ECH 27 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.0e-61 230.7
Vvi18g257 . 2 121 Primary Pumps ATPases(2) AT1G19910 99.2 4.8e-52 200.7
Vvi3g52 ECH 2 121 Primary Pumps ATPases(2) AT1G19910 99.2 4.8e-52 200.7
Vvi18g1050 ECH 2 121 Primary Pumps ATPases(2) AT1G19910 98.3 1.1e-51 199.5
Vvi18g257 . 27 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.4e-60 229.2
Vvi18g1050 ECH 27 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.4e-60 229.2
Vvi3g52 ECH 27 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.4e-60 229.2
Vvi18g257 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 1.5e-66 249.6
Vvi3g52 ECH 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 1.5e-66 249.6
Vvi18g1050 ECH 4 165 Primary Pumps ATPases(2) AT1G75630 81.6 1.9e-66 249.2
Vvi18g257 . 1 165 Primary Pumps ATPases(2) AT2G16510 100.0 4.1e-75 277.7
Vvi3g52 ECH 1 165 Primary Pumps ATPases(2) AT2G16510 100.0 4.1e-75 277.7
Vvi18g1050 ECH 1 165 Primary Pumps ATPases(2) AT2G16510 99.4 9.2e-75 276.6
Vvi4g414 . 3 173 Primary Pumps ATPases(2) AT4G32530 78.6 9.0e-75 276.9
Vvi9g460 . 2 175 Primary Pumps ATPases(2) AT4G32530 77.5 1.2e-74 276.6
Vvi4g414 . 5 173 Primary Pumps ATPases(2) AT2G25610 86.4 5.0e-71 264.6
Vvi9g460 . 5 175 Primary Pumps ATPases(2) AT2G25610 85.4 8.5e-71 263.8
Vvi14g1489 . 1 306 Primary Pumps ATPases(2) AT3G28710 93.5 1.2e-169 592.8
Vvi14g1489 . 1 306 Primary Pumps ATPases(2) AT3G28715 91.5 2.2e-163 572.0
Vvi8g649 ECH 1 931 Primary Pumps ATPases(2) AT1G07810 70.9 0.0e+00 1381.7
Vvi6g367 ECH 1 846 Primary Pumps ATPases(2) AT1G07810 74.4 0.0e+00 1275.4
Vvi15g651 . 1 777 Primary Pumps ATPases(2) AT1G07810 50.3 1.2e-255 880.2
Vvi8g649 ECH 24 912 Primary Pumps ATPases(2) AT4G00900 60.6 0.0e+00 1126.3
Vvi15g651 . 2 775 Primary Pumps ATPases(2) AT4G00900 60.0 0.0e+00 1115.9
Vvi6g367 ECH 22 832 Primary Pumps ATPases(2) AT4G00900 61.6 2.5e-298 1021.9
Vvi18g628 ECH 1 1001 Primary Pumps ATPases(2) AT1G10130 84.7 0.0e+00 1660.6
Vvi8g649 ECH 1 931 Primary Pumps ATPases(2) AT1G07670 70.9 0.0e+00 1390.9
Vvi6g367 ECH 1 846 Primary Pumps ATPases(2) AT1G07670 74.9 0.0e+00 1288.1
Vvi15g651 . 1 777 Primary Pumps ATPases(2) AT1G07670 50.3 2.4e-256 882.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003683 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 3 1 1 4 2 2 46