Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g20 ATGCTTCTCCCTTCCTTATTACAAAAGATTTTGTTTGATCTCCTTATCAACAAAGAAAGCACTGGAAGAAGAGAGATGCATGCCTCAATCCAGCAGCCCACATGCTCTTTCCCATCTCTCTGCCCTCCATCAGCCAAACAAGGATGCTGCAATTCAAAAAAGCCATTTTGGAGGCATCAGCTGCATAAAACTGCAACCAAAGCGAAAGCAAGAATGATGATGAACCCTGGAAGCAATAAAGACGATGGAGAAGTTTCTGGGCAAGTGGGTCATAGGCTTTATCTGGGTATGGACTTTGGCACCTCTGGAGCGAGGTTTGTTCTTATTGACAAGCAAGGAACAATTCAGGCCCAAGGAAAGAGGGAGTATCCCCTTCTATATATGAGTGAAGAAACAATGGATTGGGTGAGCTCCTGGAAAAAGACACTTTTTTCACTACTTGAAGATGTTCCGGTTAGTCTCCGTCCATTGATTGCTTCCATCTCTATAGATGGGACTTCAGCTACGACTCTGATCATTGATAGCACCACAGGAGAACCATTATGGAGACCTTTCCTCTACAATGAGAGCTGTCCTGATGCTTTGCCAATAGTAAAGTCCATTGCTCCTGCAAACCACACAGTCTGCTCTGGTTCATCTACCCTGTGCAAGCTTGTCTCATGGTGGAATTCTGATGATTCAAATAAAGAACATGCACTATTGTTGCATCAAGCAGATTGGCTATTGTGGCTTCTTCATGGAAAGCTTGGAATTTCTGACTACAACAATGCTTTGAAGGTTGGCTATGATCCTGAACATGACTCCTATCCATCTTGGCTGCTCTCTCAGCCATATTCACGAGTTTTACCTTCTGTAAAAGCTCCTGGAGCTTCGATTGGTTATTTACAGGAGGACATAAGAACACAGTTCGGTTTTCCAAAGGATTGTGTTGTCTGCACAGGAACCACTGATAGCATTGCTGCGTTTCTCGCAGCTCGTGCTACTCAACCTGGGAAAGCTGTAACGTCTTTGGGTTCGACACTTGCTATTAAACTACTGAGCACCAGTAGGATTGAGGATGCTCGATTTGGAGTGTATAGCCATCGCCTTGATGATAAATGGCTTGTTGGAGGTGCTTCAAATACAGGTGGAGCTGTTCTTAGGCAGATTTTTACCGATGAGCAGTTGGAGAAATTGAGTGAACAGATCAATCCCATGGAAGCATCTCCTCTGGATTACTATCCTCTGCATGCTGTTGGCGAAAGATTTCCTGTGGCCGACCCAAAGATGGTTCCCAGATTACAGCCACGGCCAGAAAGCGATGTTGAGTACTTGCACGGCATTCTTGAATCCATTGCACGCATAGAGGCAAAGGCTTATAGCTTACTGAAGGACATGGGAGCAACACAGGTTGATGAAGTATTCACTGCTGGCGGTGGTGCAAAAAATAGGACATGGGCAAAGATTCGGGAACGAGTGCTTGGTTTGCCTGTGAGCCGGGCTATTCAAACCGAAGCTGCCTATGGAGCTGCTCTGTTGGCATTGAAGGGCGCCCAGCGAGATATAGATATTCCGTGA 1557 45.6 MLLPSLLQKILFDLLINKESTGRREMHASIQQPTCSFPSLCPPSAKQGCCNSKKPFWRHQLHKTATKAKARMMMNPGSNKDDGEVSGQVGHRLYLGMDFGTSGARFVLIDKQGTIQAQGKREYPLLYMSEETMDWVSSWKKTLFSLLEDVPVSLRPLIASISIDGTSATTLIIDSTTGEPLWRPFLYNESCPDALPIVKSIAPANHTVCSGSSTLCKLVSWWNSDDSNKEHALLLHQADWLLWLLHGKLGISDYNNALKVGYDPEHDSYPSWLLSQPYSRVLPSVKAPGASIGYLQEDIRTQFGFPKDCVVCTGTTDSIAAFLAARATQPGKAVTSLGSTLAIKLLSTSRIEDARFGVYSHRLDDKWLVGGASNTGGAVLRQIFTDEQLEKLSEQINPMEASPLDYYPLHAVGERFPVADPKMVPRLQPRPESDVEYLHGILESIARIEAKAYSLLKDMGATQVDEVFTAGGGAKNRTWAKIRERVLGLPVSRAIQTEAAYGAALLALKGAQRDIDIP* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 362661 370801 + Vvi3g20 Vvi3g20 783695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g20 518 SUPERFAMILY Actin-like ATPase domain 329 512 IPR043129 -
Vvi3g20 518 PANTHER D-RIBULOSE KINASE 90 512 - -
Vvi3g20 518 Pfam FGGY family of carbohydrate kinases, C-terminal domain 363 508 IPR018485 GO:0005975|GO:0016773
Vvi3g20 518 Gene3D - 91 320 - -
Vvi3g20 518 PIRSF GlpK 91 515 IPR000577 GO:0005975|GO:0016301
Vvi3g20 518 Pfam FGGY family of carbohydrate kinases, N-terminal domain 93 323 IPR018484 GO:0005975|GO:0016773
Vvi3g20 518 Gene3D - 321 518 - -
Vvi3g20 518 PANTHER SUGAR KINASE 90 512 - -
Vvi3g20 518 SUPERFAMILY Actin-like ATPase domain 93 322 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g20 K22935 XK1, psk; D-ribulokinase [EC:2.7.1.47] - vvi:100248617 994.186
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g20 . Blo15g00671 Bda06g00960 . . . . . . . . Cma20g00815 . Car20g00699 . . . . . . . . . . . . . . . . . . . . Cone10ag1101 Lsi10g00411 . Chy11g00341 . . . . . . . . . . . Cmo20g00823 . . . . Cpe16g00271 . Bhi10g01950 . . . Hepe08g0981 . . . . . . . . . . Csa02g01302 . Cme11g00164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009802 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 33