Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g200 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGAGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA 282 36.52 MDGIKYAVFTDKSIRLLRKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKKT* 94
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1949394 1949676 + Vvi3g200 Vvi3g200 783875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g200 93 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 89 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi3g200 93 Hamap 50S ribosomal protein L23 [rplW]. 1 90 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi3g200 93 Pfam Ribosomal protein L23 4 85 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi3g200 93 ProSitePatterns Ribosomal protein L23 signature. 73 88 IPR001014 -
Vvi3g200 93 PANTHER 50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC 1 89 - -
Vvi3g200 93 Gene3D - 1 86 IPR012677 -
Vvi3g200 93 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 87 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g200 K02892 RP-L23, MRPL23, rplW; large subunit ribosomal protein L23 - csin:14412514 186.422
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014363 0 0 1 0 0 0 0 0 0 0 1 0 0 1 5 1 0 0 0 0 0 0 1 0 0 2 0 3 1 2 18