Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g202 ATGGACTCTGGATCACACCAAGCAAAATCCGATCTCAATGGAGCTTCAAACCAGCAAGGTGCTTTGAGGATAGGTGGTTCCAAGTTTGTTCCACAGATGAAACGCAGCAACCGAAGAGCTCTAGGCAACATCGATCAGAACATCTTGGGAGCTACCCTTCAGCCTTGCGTGATCACAAAAAGAGAATCCTCAGGGAAAGATGCCATCTGCATGAAGAACCCAGAAAATTTAGCATATATACAAACAACAAGGAACTTTGCAGGAGAAATGGAAATTGAGAAACCAACAACTTTGGCCTCAAATTTGAGTGGCCATGAGGATTGCAAGATTGAAGATGTTGGAGAGTTTAGGGATGTTATTGATGCTTCCACCCCAATGTTTGTGAAGCATACAGAAGCAATACTAGATGAAATCGATGAAATTGAGGAGATTGAAATGGAAGATGCAATGGAAGATGACCTTGTCTTGGATATCGACGGTTCTGATATAGAAAACCCGCTTGCTGTTGTTGAGTACATAGATGATATATATCATTTCTACAGGAAAACTGAGAGTCTCAGCTGTGTATCACCGACCTACATGTCCTTTCAATTCGATATCAACCAGAAAATGAGGGCTATCCTCATTGATTGGCTTATTGAGGTCCACTACAAATTTGAGCTCATGGACGAGACGTTATTCCTCACAGTCAACCTTATAGACAGGTTCCTAGAGCGGCAAACAGTGAGCAGAAAGAAGCTTCAACTGGTAGGCATGACAGCCATGCTTTTGGCATGTAAATATGAGGAGGTTTGTGTTCCCATTGTGGAGGATCTAATTGTGATATGCGATAAGGCTTATACAAGGACGGAAGTTTTGGATATGGAGAAAGTCATGGTGAATACTTTACAATTCAATATGTCTGTTCCAACACCATACGTATTCATGAGGAGATTCCTCAAGGCAGCTCAGTCGGACAGAAAGCTCGAGCTTCTGTCCTTCTACATCATTGAGCTATGCCTGGTTGAGTATGAAATGCTCAAATTCCCACCATCTCTGCTAGCAGCTGCAGCAGTTTACACTGCCCAGTGTAGTGTTCTCAAGTCTAGTCAATGGAGTAAAACATCTGAGTGGCATACTGCGTACTCTGAAGATCAGCTCATGGAATGCTCTAGGATGATGGTTACTTTCCATCAGAAGGCTGGTACAGGAAAGCTCACTGGAGTGCATAGGAAATACAGTACTCATAAATTTGGCTATGCAGCAAGGTCTGAACCAGCTCAATTCCTCCTTTAG 1275 42.9 MDSGSHQAKSDLNGASNQQGALRIGGSKFVPQMKRSNRRALGNIDQNILGATLQPCVITKRESSGKDAICMKNPENLAYIQTTRNFAGEMEIEKPTTLASNLSGHEDCKIEDVGEFRDVIDASTPMFVKHTEAILDEIDEIEEIEMEDAMEDDLVLDIDGSDIENPLAVVEYIDDIYHFYRKTESLSCVSPTYMSFQFDINQKMRAILIDWLIEVHYKFELMDETLFLTVNLIDRFLERQTVSRKKLQLVGMTAMLLACKYEEVCVPIVEDLIVICDKAYTRTEVLDMEKVMVNTLQFNMSVPTPYVFMRRFLKAAQSDRKLELLSFYIIELCLVEYEMLKFPPSLLAAAAVYTAQCSVLKSSQWSKTSEWHTAYSEDQLMECSRMMVTFHQKAGTGKLTGVHRKYSTHKFGYAARSEPAQFLL* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1950824 1954840 - Vvi3g202 Vvi3g202 783877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g202 424 ProSitePatterns Cyclins signature. 205 236 IPR006671 -
Vvi3g202 424 Gene3D - 189 301 - -
Vvi3g202 424 Pfam Cyclin, C-terminal domain 303 417 IPR004367 -
Vvi3g202 424 CDD CYCLIN 301 388 IPR013763 -
Vvi3g202 424 PANTHER CYCLINS 27 421 IPR039361 -
Vvi3g202 424 SUPERFAMILY Cyclin-like 302 420 IPR036915 -
Vvi3g202 424 CDD CYCLIN 204 293 IPR013763 -
Vvi3g202 424 SMART Cyclin_C_2 303 420 IPR004367 -
Vvi3g202 424 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g202 424 Gene3D - 175 414 - -
Vvi3g202 424 Pfam Cyclin, N-terminal domain 175 301 IPR006671 -
Vvi3g202 424 PANTHER CYCLIN-B2-3-RELATED 27 421 - -
Vvi3g202 424 SUPERFAMILY Cyclin-like 164 300 IPR036915 -
Vvi3g202 424 SMART cyclin_7 307 389 IPR013763 -
Vvi3g202 424 SMART cyclin_7 210 294 IPR013763 -
Vvi3g202 424 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g202 K21777 - vvi:100262390 822.002