Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g208 ATGGCTTCAACCTTCCCTCACACCTACTTCTACAATTCCAAACGACCCAGAAACGCTTCGAGGGAAAAACGAGCCCGAACCCCACAAACAAACCCGGACACTGACCTAATACTGAAGCCACGGATCTTCAAAACAGCCCGAAGTAAGAGAAATCAATCGTTTTTGGTTGAACGAAACAGTGTCTCGCTCACTAGAGCTCTTTCCTCGTATGTGGAACGTGGGTACATGAAGAATGCACTCGACCTGTTTGAGAATATGCGTCAGTGTGATACTTTCATTTGGAATGTGATGATTAGAGGGTTTGTTGATAATGGATTGTTTTGGGATGCGGTTGATTTTTACCATAGAATGGAATTCGGAGGGGTTAGAGGTGATAATTTCACTTACCCGTTTGTGATAAAGGCGTGTGGTGGGTTGTATGATTTGGCAGAAGGAGAGAGGGTTCATGGGAAAGTGATTAAGAGTGGGTTGGATTTGGATATTTATATTGGGAATTCACTTATTATTATGTATGCGAAGATTGGGTGTATTGAGTCTGCGGAGATGGTGTTCCGGGAAATGCCTGTTAGGGACTTGGTTTCTTGGAATTCTATGATTAGTGGGTACGTTTCAGTTGGGGATGGTTGGAGATCACTGTCGTGTTTTCGTGAAATGCAAGCATCTGGTATTAAACTGGATAGGTTCAGTGTGATTGGCATACTTGGTGCTTGTTCGCTTGAGGGTTTTCTGCGAAATGGGAAGGAAATTCACTGCCAAATGATGCGAAGTAGGCTTGAATTGGATGTCATGGTTCAGACATCACTGGTAGACATGTATGCAAAATGTGGTAGGATGGATTATGCAGAGAGGTTGTTTGATCAAATTACTGATAAAAGCATTGTGGCATGGAATGCTATGATAGGTGGATATTCTCTAAATGCACAATCCTTTGAGTCATTTGCTTATGTGAGAAAGATGCAGGAGGGTGGAAAATTGCATCCTGATTGGATTACAATGATAAACTTGCTCCCTCCTTGTGCACAGTTAGAAGCAATCTTGCTGGGTAAATCTGTTCATGGCTTTGCAATTAGAAATGGGTTTCTCCCTCATCTGGTCTTGGAGACCGCTCTGGTAGATATGTATGGAGAGTGCGGAAAGCTGAAACCAGCAGAATGTTTGTTTGGTCAAATGAATGAAAGGAATTTGATATCTTGGAATGCCATGATCGCTTCTTATACGAAAAATGGGGAGAACAGGAAGGCCATGACACTGTTCCAAGATCTTTGCAACAAGACTCTTAAACCAGATGCAACTACAATTGCTAGCATCCTGCCCGCCTATGCCGAGTTAGCCTCATTGAGAGAGGCAGAACAAATTCATGGTTATGTCACGAAATTGAAGCTTGATTCAAATACCTTTGTCTCTAATTCTATTGTTTTTATGTATGGAAAATGTGGGAATCTCCTGAGAGCAAGGGAAATTTTTGATAGGATGACTTTTAAGGATGTCATTTCATGGAACACGGTCATTATGGCTTATGCCATTCATGGGTTCGGGAGAATTTCCATTGAATTGTTCTCTGAGATGAGGGAAAAGGGCTTTGAACCTAATGGCAGTACTTTTGTTTCCTTGTTATTATCTTGTAGTGTTGCTGGCTTGGTCAATGAAGGGTGGGAATACTTCAATTCAATGAAAAGGGACTACAATATCAATCCGGGAATAGAGCATTATGGTTGTATACTTGATCTTATTGGTCGCACCGGGAATCTTGACCATGCCAAGAATTTCATTGAAGAAATGCCACTGGCTCCCACAGCCAGAATATGGGGATCTTTGTTGACTGCAAGTAGAAACAAAGGAGACGTAGAGTTAGCTGAAATTGCAGCTGAGCACATTTTATCCCTGGAACACGACAATACTGGTTGTTATGTCTTGCTTTCTAATATGTATGCTGAAGCGGGGAGGTGGGAAGATGTGGAGCGGATTAAATTTCACATGAAGAAAGAGGGATTAGAAAAATCAGTTGGATGTAGTGTGGTTGACCTCAGTAGTAAGACTTTCAGGTTCGTGAATCAAGATCGGTCCGACAATGAAATCAACATGGTCTATGATGTGTTAGATATCATCTCAAAGAAGATAGGAGAAGATGTTTATGTTCATAGTCTCACCAAGTTCAGACCATCTGATTTGGAGAAAAAAAGAGCAAACTCAGCAAAAAGTCACAGTTTGAGGTTAGCAATTTGCTTTGGCTTGATCTCAACAACTATTGGAAACCCTGTTCTTGTAAGAAAAAACATTAGAATATGTGAAGCTTGCCATAGATTTGCAAAGAGGATTTCAGAGACAACTAAAAGAGAGATAATAGTCAGGGATTCAAAGATCTTTCACCACTTCAATGGTGGGCATTGTTCATGTGGAGATTATTGGTGA 2409 41.18 MASTFPHTYFYNSKRPRNASREKRARTPQTNPDTDLILKPRIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW* 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2034766 2037175 - Vvi3g208 Vvi3g208 783883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g208 802 Pfam E motif 614 673 IPR046848 -
Vvi3g208 802 Pfam DYW family of nucleic acid deaminases 725 802 IPR032867 GO:0008270
Vvi3g208 802 MobiDBLite consensus disorder prediction 1 35 - -
Vvi3g208 802 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 67 796 - -
Vvi3g208 802 TIGRFAM PPR: pentatricopeptide repeat domain 396 430 IPR002885 -
Vvi3g208 802 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Vvi3g208 802 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Vvi3g208 802 TIGRFAM PPR: pentatricopeptide repeat domain 93 123 IPR002885 -
Vvi3g208 802 MobiDBLite consensus disorder prediction 1 15 - -
Vvi3g208 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi3g208 802 Pfam PPR repeat 165 190 IPR002885 -
Vvi3g208 802 Pfam PPR repeat 294 323 IPR002885 -
Vvi3g208 802 Pfam PPR repeat 193 223 IPR002885 -
Vvi3g208 802 Pfam PPR repeat 66 89 IPR002885 -
Vvi3g208 802 Pfam PPR repeat 469 492 IPR002885 -
Vvi3g208 802 Pfam PPR repeat 266 291 IPR002885 -
Vvi3g208 802 Pfam PPR repeat family 494 540 IPR002885 -
Vvi3g208 802 Pfam PPR repeat family 394 440 IPR002885 -
Vvi3g208 802 Pfam PPR repeat family 90 136 IPR002885 -
Vvi3g208 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Vvi3g208 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Vvi3g208 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi3g208 802 PANTHER BNAANNG11600D PROTEIN 67 796 - -
Vvi3g208 802 Gene3D Tetratricopeptide repeat domain 33 139 IPR011990 GO:0005515
Vvi3g208 802 Gene3D Tetratricopeptide repeat domain 140 244 IPR011990 GO:0005515
Vvi3g208 802 Gene3D Tetratricopeptide repeat domain 349 452 IPR011990 GO:0005515
Vvi3g208 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vvi3g208 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vvi3g208 802 Gene3D Tetratricopeptide repeat domain 474 689 IPR011990 GO:0005515
Vvi3g208 802 Gene3D Tetratricopeptide repeat domain 245 348 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g208 - - - vvi:100264174 1628.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g208 . . . . . Bpe12g00131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00495 Bda15g01022 . . . . Bma08g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017223 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5