Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g210 ATGGACTCCCTGGCTCTGTTTTGTACAGCTTCTCTTGTCGCCGGCGGTGTGTACTGGTTCGTCTTCCTCCTTGGCGCTGCCGAGCGTAAAGGCAAACGAGCCGTACACCTCTCTGGCGGCTCCATCTCCGGAGACAAAGTCCGGGACAATTACAAGCAATACTGTCGTTCCACTTCTCGCCGTCCGTGGCCGGGAAGTCGCACCGAGATGCCACGCGCGCACTCCGGTGCTAATGTAGTTGGAATCACGATCAATGAGTACCAGGTGAACCGCGCTCACTTACACAACAAGAAAGCTGGTCTCGAATCGCAATGCGAGGTGGTATGCGGTAACTTTCTCGAAATGCCGTTCCCGGATAACTCTTTCGACGGCGCCTACTCGATCGAAGCGACGTGCCACGCGCCGAAGCTCGAAGAGGTTTACAGCGAGATTTTTAGGGTTTTGAAGCCTGGGTCAATGTATGTCTCATATGAATGGAATTGCGTATTGGAGGAACCATATACTGGTAACAGTGCTTGGTTGGTTGGGGATTGCTCCGAAAGGGGTTGTTGA 552 53.44 MDSLALFCTASLVAGGVYWFVFLLGAAERKGKRAVHLSGGSISGDKVRDNYKQYCRSTSRRPWPGSRTEMPRAHSGANVVGITINEYQVNRAHLHNKKAGLESQCEVVCGNFLEMPFPDNSFDGAYSIEATCHAPKLEEVYSEIFRVLKPGSMYVSYEWNCVLEEPYTGNSAWLVGDCSERGC* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2054487 2055821 - Vvi3g210 Vvi3g210 783885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g210 183 CDD AdoMet_MTases 73 159 - -
Vvi3g210 183 Pfam Methyltransferase domain 74 154 IPR013216 GO:0008168
Vvi3g210 183 Gene3D Vaccinia Virus protein VP39 65 176 IPR029063 -
Vvi3g210 183 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 73 159 IPR030384 GO:0008168
Vvi3g210 183 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 72 166 IPR029063 -
Vvi3g210 183 Coils Coil 84 104 - -
Vvi3g210 183 PANTHER - 1 63 IPR044625 GO:0008168|GO:0032259
Vvi3g210 183 PANTHER - 72 161 IPR044625 GO:0008168|GO:0032259
Vvi3g210 183 PANTHER METHYLTRANSFERASE 72 161 - -
Vvi3g210 183 PANTHER METHYLTRANSFERASE 1 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g210 K08242 E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143] - vvi:100262458 184.111
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g210 Vvi18g160 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070461 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1