Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g211 ATGGAGAAGTTGGCAGGCCTGACACACCTCTTCGTGACGGTTTTGCTGGGGAGTTTCTCCGCCTTCATAGTGATTCCGGCCATTACTGACGTCACCATGTCTGCGCTCTGCCCCGGTAAAGACGAATGCTCTCTCGCCATTTACCTCTCTGGTTTCCAGCAGGCGATTATAGGACTGGGAACCGTTGTGATGACACCTGTAATTGGGAATTTGTCTGATGAATATGGAAGGAAGGCTCTGCTCACAATTCCAATGGCCCTCTCCATCATTCCCTTGGCTATATTGGCATATAGCAGGACTACCACCTCCTTCTACGCATACTTTGTGATCAGGACTCTTACTGCCATGGTTGGTGAAGGCAGTATAAACTGCCTTGCTCTCGCATATGTGGCAGACAACATTTCAGAAGGCCAACGAGCCTCAGCTTTCGGAGTTCTATCTGGGGTAGCATCTGCTGCCTTTGTCTGTGGAACCCTAGCCGCCCGCTTCCTCTCCACTGCCTCCACCTTTCAGGTTGCCACCCTTGTATCGATGATTGCAACCGTTTACATGAGAGTTTTCCTCAAGGAGACTTTCCCCAAAGGCGATTCTTCACAGGCATTATTGAAAAAAGAACCGGGTATGAGTCCTGACGATGGTAACTCATCGGAGAAGATACAGACATTCAAGAAAATTCCATCTGTTGGAGACCTGATCAGCTTGTTGAAGTGCAGGGCGGCATTTTCACAGGCTGCAGTCGTCGTCTTCTTCAACGGTCTTGCAGAGGGTGGCCTCCAGGCCTCACTGTTGTACTTCTTGAAGGCTCGGTTTCACTTCAACAAAAACCAGTTTGCAGACATAATGCTAATCGTTGGGGTCATGGGGACCATTTCACAACTGCTTTTCATGCCCTTGTTGGCGCCTCGAGTATCAGAAGAGAAGTTGCTCTCTATAGGGCTCTTCATGGGATGCACAAACATATTTCTCAACAGCATCGCTTGGTCATTCTGGGTCCCATATGCCATTGCTGCGTTGGCTGCTTTTGCAGTATTTGCTAACCCTTGTGTACGAAGCATCGCATCGAAGCAAGTAGGCCCCAATGAGCAGGGAAAGGCTCAAGGCTGTATATCAGGCATAAGTTCCTCAGCCCAGATAATTTCTCCCTTGATCTTTAGTCCTCTAACAGCTCTATTCTTATCTCAAGGAGCACCATTTTATTTTCCTGGTTTCAGCATCATGTGCATTGGATTTGCTTCAATGATCGCCTTCATTCAGAGTACTATGATAAGGGCTGTTCCTCCTATTTCAAGTCAGCCAACCAGCAACAGCATCGAGGCCTAG 1320 48.33 MEKLAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGLGTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGEGSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMIATVYMRVFLKETFPKGDSSQALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLLKCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLFMPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAFAVFANPCVRSIASKQVGPNEQGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIAFIQSTMIRAVPPISSQPTSNSIEA* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2060586 2066331 + Vvi3g211 Vvi3g211 783886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g211 439 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 430 - -
Vvi3g211 439 CDD MFS_SLC46_TetA_like 10 419 - -
Vvi3g211 439 Gene3D MFS general substrate transporter like domains 5 422 IPR036259 -
Vvi3g211 439 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 6 430 - -
Vvi3g211 439 SUPERFAMILY MFS general substrate transporter 13 414 IPR036259 -
Vvi3g211 439 PRINTS Tetracycline resistance protein signature 56 72 IPR001958 GO:0022857
Vvi3g211 439 PRINTS Tetracycline resistance protein signature 305 326 IPR001958 GO:0022857
Vvi3g211 439 PRINTS Tetracycline resistance protein signature 330 350 IPR001958 GO:0022857
Vvi3g211 439 PRINTS Tetracycline resistance protein signature 365 388 IPR001958 GO:0022857
Vvi3g211 439 Pfam Major Facilitator Superfamily 10 381 IPR011701 GO:0022857|GO:0055085
Vvi3g211 439 ProSiteProfiles Major facilitator superfamily (MFS) profile. 10 421 IPR020846 GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g211 - - - vvi:100257341 822.002
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g211 Vvi18g159 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123