Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g212 ATGGTGTTTACTAAAAACCGAATCAAAAGATCGAAGCAAACGATGTCGAGGAGGAGGTCTACAACGAGTCTGGACAGAGCAGTCGTCGACGTTTGGCAGCGGGAGGTCGGCGGGCTCCCCAACAGAAGCTTCGCGCATCGCCTCGCCGCTTCTAAGGATCTTGTGCTTCAATTTGATATCTATAGGAAGCTGGAAAAGCACAGAGGTTGTGTGAACACAGTAAGCTTCAATGCAGATGGTGAAATTCTTGTGTCAGGCTCTGATGACAGGCGGATTATACTATGGGATTGGGAATCTGGGCATGTCAAACTTTCATTTGAATCTGGTCATATTAACAATGTTTTCCAAGCAAAGTTCATGCCTTACACAGATGATCGAAGCATTGTTACTTGCGCAGCAGATGGCCAGGTGAGGCGTGCTCAGATTCTAGAAAGTGGGCGGGTTGAGACTACTTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATTGAAGAAAGGAGGAGGGGATTGCGGGCCGTTGTCCAACTAAATGCGATTGCAATAGATCCAAGGAATTCAAATCTGTTTGCTGTTGCAGGGTCAGATGAATATGCTCGACTTTATGATATCCGCAAATATAAGTGGGATGGATCTACTGATTTTGATCAACCCATAGACTTCTTTTGCCCTTCACATTTGATTGGTAATCCATATGTGGGAATAACAGGCCTGTCCTTCTCAGACCAGAGAGAGCTTCTTGTGTCCTACAATGATGAGTTCATCTATCTTTTCACAAAGGATATCGGATTGGGACCTGACCCTATTCCAGCTTCTCCAGCTTCTTTGGGCATCTACAAGGGGCACAAAAATTGTAAGACAGTGAAGGGTGTAGGCTTCTTTGGGCCTAAATGTGAGTATGTGGTGAGTGGGTCAGACTGTGGCCGCATATTCATTTGGAAGAAGAGTGGGGAGCTCATTCGTGTAATGGAAGCTGATCAGCATGTGGTCAACTGTATCGAGTCTCATCCTCATGCTACAGTGCTTGCCAGCAGTGGAATTGAGAAAGACATCAAGATATGGACTCCGAAGGCTACTGAGAAAGCTATCCTGCCTAAAACAATTGAACGGAAACCAAAGGCAATGGACAGGATGTACCGCTTGGCTTCGCCCCAGGACCTGATGATACAGCTATTTTCATTGCAAAGGCAACTAAGGACAACTCGGGAGGAGCACGGTGCTGCAAGCTTGGCTGAGAACTTGGTCGGAGATCAGGAACTTTTCGATCTCATAATGACATTTAATGCCAACAGTGATGTTTCCTCTGATGATGGAGATACATCCAGCAGTGCTGAAGATCCATGTAGCTGA 1461 46.06 MVFTKNRIKRSKQTMSRRRSTTSLDRAVVDVWQREVGGLPNRSFAHRLAASKDLVLQFDIYRKLEKHRGCVNTVSFNADGEILVSGSDDRRIILWDWESGHVKLSFESGHINNVFQAKFMPYTDDRSIVTCAADGQVRRAQILESGRVETTLLAKHQGRAHKLAIEPGSPYIFYTCGEDGLVQHIDLRSRAATELLTCHQIEERRRGLRAVVQLNAIAIDPRNSNLFAVAGSDEYARLYDIRKYKWDGSTDFDQPIDFFCPSHLIGNPYVGITGLSFSDQRELLVSYNDEFIYLFTKDIGLGPDPIPASPASLGIYKGHKNCKTVKGVGFFGPKCEYVVSGSDCGRIFIWKKSGELIRVMEADQHVVNCIESHPHATVLASSGIEKDIKIWTPKATEKAILPKTIERKPKAMDRMYRLASPQDLMIQLFSLQRQLRTTREEHGAASLAENLVGDQELFDLIMTFNANSDVSSDDGDTSSSAEDPCS* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2066433 2081541 - Vvi3g212 Vvi3g212 783887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g212 486 SMART WD40_4 57 96 IPR001680 GO:0005515
Vvi3g212 486 SMART WD40_4 204 240 IPR001680 GO:0005515
Vvi3g212 486 SMART WD40_4 309 351 IPR001680 GO:0005515
Vvi3g212 486 SMART WD40_4 353 392 IPR001680 GO:0005515
Vvi3g212 486 SMART WD40_4 145 186 IPR001680 GO:0005515
Vvi3g212 486 SMART WD40_4 257 296 IPR001680 GO:0005515
Vvi3g212 486 SMART WD40_4 99 141 IPR001680 GO:0005515
Vvi3g212 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 64 105 IPR001680 GO:0005515
Vvi3g212 486 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 17 304 IPR045151 -
Vvi3g212 486 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 315 436 IPR045151 -
Vvi3g212 486 SUPERFAMILY WD40 repeat-like 56 391 IPR036322 GO:0005515
Vvi3g212 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 64 96 - -
Vvi3g212 486 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g212 486 Pfam WD domain, G-beta repeat 364 391 IPR001680 GO:0005515
Vvi3g212 486 Pfam WD domain, G-beta repeat 313 351 IPR001680 GO:0005515
Vvi3g212 486 Pfam WD domain, G-beta repeat 62 96 IPR001680 GO:0005515
Vvi3g212 486 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 315 436 - -
Vvi3g212 486 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 17 304 - -
Vvi3g212 486 Gene3D - 50 394 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g212 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - vvi:100251996 790.415
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57