Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g213 ATGGATGAGGCATTACAACTTTTTGACAGCATGCAGGAGCGGAATGTGGTTAGCTGGAATGCCATGGTTACTGGGTTTTTGCAGAATGGGGATGTAGAGAGGGCTATTGAGTTTTTCATGCGAATGCCGGAGAGGGACTCGGCTTCTCTCAGTGCTCTTGTGGCAGGTTTAATTCAGAATGGTGAATTGGATGAAGCAAAAAGAATTTTGCTTACGAGCAGGAGACAGGATGATGACAAAGGTGATCTGGTACATGCTTATAATATTTTGCTTGCTGGGTATGGTCAAAATGGAAGAGTCGACAAAGCTCGACAACTTTTTGATCAAATCCCATTTTATGATGGAGGACAGAAAGATGGTGGGCGGTTTGAAAGGAATGTAGTATCATGGAATTCCATGATCATGTGCTATGTGAAAGCCAGGGACATCTTTTCTGCCAGGGTTCTTTTTGATCAAATGAAAGAGCGCGATACTATTTCTTGGAACACCATGATCAGTGGCTATGTTCGCATGTCAGATATGGAAGAAGCATGGATGCTTTTTCAAGAAATGCCAAACCCTGACACACTGACATGGAATTCAATGATCTCTGGATTTGCACAGAAGGGTAATCTAGAACTTGCCCGTGCTCTATTTGCAACGATTCCACAGAAAAACCTGGTCTCATGGAACTCCATGATAGCAGGTTATGAGAATAATGGAGACTACAAAGGAGCAACTGAACTCTACAGGCAGATGCTACTCCAAGGAGAGAAACCTGATAGGCACACTTTATCTTCAGTCCTTAGTGTGTGCTCAGGGTTCGCAGCTCTGCACCTAGGTATGCAAATCCATCAGCAGATTACAAAAACAGTTATTCCAGATATACCAATAAATAACTCCCTGATTACCATGTATTCAAGGTGTGGGGCAATAGTTGAAGCTCGAACCATTTTTGATGAGGTGAAATTGCAGAAAGAAGTAATCTCTTGGAATGCAATGATCGGAGGATATGCATTTCATGGATTTGCTGCAGACGCTCTAGAACTTTTTGAGTTGATGAAGAGGCTTAAAGTGCGGCCCACTTATATTACATTTATCTCAGTTTTGAATGCGTGTGCTCATGCTGGGTTCGTGAAAGAAGGTCGGATGCACTTCAAATCCATGGCCTGTGAATTTGGAATTGAGCCACGAATTGAGCACTTTGCCTCCCTTGTGGACATTGTGGGTCGACATGGGCAGCTTGAGGAGGCTATGGATCTGATCAATAGCATGCCATTTGAACCAGATAAGGCTGTGTGGGGTGCATTACTGGGTGCTTGTAGGGTGCATAACAATGTGGAGTTGGCCCGAGTTGCAGCTGAAGCATTGATGAAACTGGAACCAGAAAGCTCAGCCCCGTATGTATTGCTTCACAACATGTATGCTGATGTGGGGCAATGGGATAATGCAACAGAAATGAGAATGATGATGGAAAGAAATAATATCAGAAAGCAACCAGGATATAGTTGGGTAGATTCCTCCCATTCTGGATAG 1515 43.56 MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVDSSHSG* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2084982 2086497 - Vvi3g213 Vvi3g213 783888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g213 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 156 IPR002885 -
Vvi3g213 504 Gene3D Tetratricopeptide repeat domain 186 287 IPR011990 GO:0005515
Vvi3g213 504 Pfam PPR repeat 128 156 IPR002885 -
Vvi3g213 504 Pfam PPR repeat 191 214 IPR002885 -
Vvi3g213 504 Pfam PPR repeat 397 418 IPR002885 -
Vvi3g213 504 Pfam PPR repeat 293 316 IPR002885 -
Vvi3g213 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Vvi3g213 504 SUPERFAMILY HCP-like 26 251 - -
Vvi3g213 504 Pfam PPR repeat family 320 367 IPR002885 -
Vvi3g213 504 Pfam PPR repeat family 157 185 IPR002885 -
Vvi3g213 504 Pfam PPR repeat family 218 265 IPR002885 -
Vvi3g213 504 Pfam PPR repeat family 14 45 IPR002885 -
Vvi3g213 504 Pfam PPR repeat 87 109 IPR002885 -
Vvi3g213 504 Gene3D Tetratricopeptide repeat domain 1 80 IPR011990 GO:0005515
Vvi3g213 504 Gene3D Tetratricopeptide repeat domain 86 185 IPR011990 GO:0005515
Vvi3g213 504 PANTHER OS06G0228900 PROTEIN 1 499 - -
Vvi3g213 504 PANTHER OS07G0578800 PROTEIN-RELATED 1 499 IPR045215 GO:0003723|GO:0009451
Vvi3g213 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 86 110 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 221 254 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 17 46 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 128 157 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 159 184 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 191 213 IPR002885 -
Vvi3g213 504 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Vvi3g213 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi3g213 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vvi3g213 504 Gene3D Tetratricopeptide repeat domain 292 503 IPR011990 GO:0005515
Vvi3g213 504 Pfam E motif 437 499 IPR046848 -
Vvi3g213 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 113 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g213 - - - vvi:100255431 1007.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19