Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g214 ATGCTGGCTAATCTACAAGTCTCCCGCCCACAGCCATGGAACCATCGATCACCATTGTTGATTCAATGCGCTCTGAGCAAACAAGGCCAACTCTTTCTCTCTTCAGTAGCCAGAGATCCCTCCGCCAGTAACAGATTGATATGCAAATTCATAGCATCTTCATCCAAATCCATAGCTCTCAATGCTCTCTCCCACCTCCTTTCCCCCACCACCACTCACCCCTACCTCTCCTCTCTTGCCCTCCCTTTGTATTCAAGGATTAGTGAAGCATCATGGTTCAGTTGGAACCCTAAGCTTATTGCAGACGTCATTGCTTTGTTATATAAACAAGGGCAGTTGAAGGAAGCAGAAACTCTAGTTTCTGAAACACTGATAAAATTAGGGTCTCGGGAGCGAGACCTTGTTTCCTTTTACTGCAATTTGATTGATTCACACTCCAAGCACAGCTCAAATCAAGGGGTTTTTGATGTGATTTCTCGTTTGAGTCGGATAGTCTCTGAATCGTCCTCTGTTTATGTTAAGGAACGAGCTTACAAGTCAATGATTAGTAGCTTATGTGCAGTTGGTCTACCTCTTGAAGCTGAGAATCTGATTGAAGAGATGAGAGTAAAAGGACTGAAACCATCTGTCTTTGAGTTCAGGTCTGTAGTGTATGGATATGGAAGAGTAGGATTGTCCGAAGATATGCAGAGAATTCTTCTGCAAATGGGGAATGAAGGGTTTGAACTGGATACAGTTGTCTCGAATATGGTTCTTTCATCCTACGGAGCCTACAACAAGCAATCTGAAATGGTGTCTTGGCTTCAAAGAATGAAGAATTCAAGCATTCCATTTTCCATCAGGACTTACAATTCAGTGTTGAATTCGTGCCCTATGATCATGTCAATCCTACAAGACCTCAAAACTTTTCCGCCAACCATTGATGAGTTGATGGAGACCTTGAAAGGGGATGAGGCATTGTTGGTTAAAGAATTGATTGGATCAATGGTTTTGGCAGAGTTAATGGAGTGGGATTGTTCAGAGGGGAAGCTGGATTTGCATGGAATGCACCTGGGGTCTGCATACTTGATAATGTTGCAGTGGAGGGAGGAGCTGAGGTATAGGCTTAATGCAGCAGAGTATGTGATGCCAGTGGAGATTACAGTGGTGTGTGGATCGGGAAAGCATAGCAGTGTTAGAGGGGAATCACCTGTGAAAAGAATGGTTCGAGAGATGATGACACGGACAAGAAGCCCGATGAAAATTGATAGGAAGAACATTGGTTGTTTTGTTGCAAAAGCAAAAGTTGTGAAGAACTGGCTGTGCTGA 1308 43.65 MLANLQVSRPQPWNHRSPLLIQCALSKQGQLFLSSVARDPSASNRLICKFIASSSKSIALNALSHLLSPTTTHPYLSSLALPLYSRISEASWFSWNPKLIADVIALLYKQGQLKEAETLVSETLIKLGSRERDLVSFYCNLIDSHSKHSSNQGVFDVISRLSRIVSESSSVYVKERAYKSMISSLCAVGLPLEAENLIEEMRVKGLKPSVFEFRSVVYGYGRVGLSEDMQRILLQMGNEGFELDTVVSNMVLSSYGAYNKQSEMVSWLQRMKNSSIPFSIRTYNSVLNSCPMIMSILQDLKTFPPTIDELMETLKGDEALLVKELIGSMVLAELMEWDCSEGKLDLHGMHLGSAYLIMLQWREELRYRLNAAEYVMPVEITVVCGSGKHSSVRGESPVKRMVREMMTRTRSPMKIDRKNIGCFVAKAKVVKNWLC* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2088699 2090248 + Vvi3g214 Vvi3g214 783889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g214 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vvi3g214 435 ProSiteProfiles Smr domain profile. 344 428 IPR002625 -
Vvi3g214 435 PANTHER OS02G0120000 PROTEIN 21 435 - -
Vvi3g214 435 Gene3D Tetratricopeptide repeat domain 98 295 IPR011990 GO:0005515
Vvi3g214 435 SMART SMR_2 341 428 IPR002625 -
Vvi3g214 435 Pfam Pentatricopeptide repeat domain 231 290 IPR002885 -
Vvi3g214 435 SUPERFAMILY SMR domain-like 342 426 IPR036063 -
Vvi3g214 435 Gene3D - 342 426 IPR036063 -
Vvi3g214 435 Pfam PPR repeat 177 206 IPR002885 -
Vvi3g214 435 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Vvi3g214 435 PANTHER ATPASE EXPRESSION PROTEIN 3 21 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g214 - - - vvi:100250254 838.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g214 . Blo15g00393 Bda06g00469 . Bpe07g00705 . . Bma12g00911 . . . Cma20g00733 . Car20g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00731 . . . . Cpe16g00334 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30