Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g216 ATGTGGTGGGATTGCAAGTTCAAGATATGGAGAGAACCGAGCTATGAATTTTGGAGAGATGGAGGCGAGATTGAACGAAAAAGTGGTGGGAGTTTTCAGTTCCAGCAGCCGTTGGCGACGGAGGATCCACCGTCTAAGCTGATTGGCCAGTTCTTACACAAACAGAAAGCGTCGGGTGATTTTTCTCTTGATATGGATATGGAAATGGAAGAGCTGAGAGATGAGAAGAGCGAGCCTCCGATGCCAGAGAATGACATTAAACGAGACAATTGCGACAATCCGGATGGTGAAGTTTTGATGTGTACTTCAAACATGGAGTTTCAAAGGAAGTCGACTTTGTTAAGAAACAAGACCAAGTCAAGGTTGGCAGATCGTACCGAATATGTAATGAAGTCCGGGTTAGTGCCCAAATCAGGTCTGTTGCCAAAGTCTGGGATGTTGAAATCAGGATTGTTGGGGAAATCTGAGGAAGACGAAGAAGATCCGGAGACAAAGAACGATTCTCTTAAGTATCTTAATCATGAGAATGTTTCTGCCTGGAACATGAAGAGGTTAATGCATATGGTGCGGCATGGGTCCCTTGCTACACTGGATGAGCAAATTCATGATTCAACTCACAAGGACGAGTCTGCAACGCAGATTAAGAGTGAACATGAGGCAAAAATTGCGGCAAGGAAAATATTTCACAATGTAGCCAAGCCAAATTGCAAATACATTGACCTGGAGGATATAATGCGCTTCATGCGAGAAGATGAAGCTTTGAAAACCATGAGTCTGTTTGAAGGAGCATCCCAAAGTGGGAAAATCAGCAAGTCAGCCTTGAAGAACTGGGTGGTTAATGCTTTCAGAGAAAGGCGAGCACTTGCTTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTCTCCTCCTAGTCGCATTTATATTTGGAAACACCTGCAAAAATATATTTGAAGCCATAATCTTCTTATTTGTGATGCATCCTTTTGATGTGGGTGATCGGTGTGAGATTGATGGAGTTCAGATGATAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGGGGCGACAACCAGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGCCCATTGGCAATTACTATCGTAGTCCTGACATGGGAGATTCAGTTGAATTCCTCGTCCATATTGCAACTCCAGCAGAGAAGATTGCCATCATAAGACAGAGAATATTAAGTTACATGGAGAGCAAGAAAGACCACTGGGCTCCTTCACCCATGGTTATTGTAAAGGACTTGGAGGGGTTGAACCAGCTGAGGGTGGCGGTTTGGATGAGCCACACAATAAACCACCAAAATATGGGGGAGAGGTGGACAAGGAGATGCCTTCTGGTCGACGAGATAGTCAAAATTCTGAGGGAGGTCGACATTGAGTATCGCATGATACCGTTGGACATCAACGTCCGCTCCATGCCCATGCCATCCCCTGTGACTTCCAGTCGCCTTCCCCCTTCCTGGACAGCTAGTGGCGGAAACTGA 1548 44.9 MWWDCKFKIWREPSYEFWRDGGEIERKSGGSFQFQQPLATEDPPSKLIGQFLHKQKASGDFSLDMDMEMEELRDEKSEPPMPENDIKRDNCDNPDGEVLMCTSNMEFQRKSTLLRNKTKSRLADRTEYVMKSGLVPKSGLLPKSGMLKSGLLGKSEEDEEDPETKNDSLKYLNHENVSAWNMKRLMHMVRHGSLATLDEQIHDSTHKDESATQIKSEHEAKIAARKIFHNVAKPNCKYIDLEDIMRFMREDEALKTMSLFEGASQSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVLLLVAFIFGNTCKNIFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRGDNQKIVFPNSTLATRPIGNYYRSPDMGDSVEFLVHIATPAEKIAIIRQRILSYMESKKDHWAPSPMVIVKDLEGLNQLRVAVWMSHTINHQNMGERWTRRCLLVDEIVKILREVDIEYRMIPLDINVRSMPMPSPVTSSRLPPSWTASGGN* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2109843 2121573 - Vvi3g216 Vvi3g216 783891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g216 515 MobiDBLite consensus disorder prediction 72 93 - -
Vvi3g216 515 Pfam Mechanosensitive ion channel 310 481 IPR006685 GO:0016020|GO:0055085
Vvi3g216 515 MobiDBLite consensus disorder prediction 152 167 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 92 164 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 156 310 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 81 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 310 512 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 81 IPR016688 -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 310 512 IPR016688 -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 156 310 IPR016688 -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 92 164 IPR016688 -
Vvi3g216 515 MobiDBLite consensus disorder prediction 145 167 - -
Vvi3g216 515 SUPERFAMILY Sm-like ribonucleoproteins 324 384 IPR010920 -
Vvi3g216 515 Gene3D - 335 384 IPR023408 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g216 Vvi18g152 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g216 K22048 - vvi:100262278 689.493