Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g216 ATGTGGTGGGATTGCAAGTTCAAGATATGGAGAGAACCGAGCTATGAATTTTGGAGAGATGGAGGCGAGATTGAACGAAAAAGTGGTGGGAGTTTTCAGTTCCAGCAGCCGTTGGCGACGGAGGATCCACCGTCTAAGCTGATTGGCCAGTTCTTACACAAACAGAAAGCGTCGGGTGATTTTTCTCTTGATATGGATATGGAAATGGAAGAGCTGAGAGATGAGAAGAGCGAGCCTCCGATGCCAGAGAATGACATTAAACGAGACAATTGCGACAATCCGGATGGTGAAGTTTTGATGTGTACTTCAAACATGGAGTTTCAAAGGAAGTCGACTTTGTTAAGAAACAAGACCAAGTCAAGGTTGGCAGATCGTACCGAATATGTAATGAAGTCCGGGTTAGTGCCCAAATCAGGTCTGTTGCCAAAGTCTGGGATGTTGAAATCAGGATTGTTGGGGAAATCTGAGGAAGACGAAGAAGATCCGGAGACAAAGAACGATTCTCTTAAGTATCTTAATCATGAGAATGTTTCTGCCTGGAACATGAAGAGGTTAATGCATATGGTGCGGCATGGGTCCCTTGCTACACTGGATGAGCAAATTCATGATTCAACTCACAAGGACGAGTCTGCAACGCAGATTAAGAGTGAACATGAGGCAAAAATTGCGGCAAGGAAAATATTTCACAATGTAGCCAAGCCAAATTGCAAATACATTGACCTGGAGGATATAATGCGCTTCATGCGAGAAGATGAAGCTTTGAAAACCATGAGTCTGTTTGAAGGAGCATCCCAAAGTGGGAAAATCAGCAAGTCAGCCTTGAAGAACTGGGTGGTTAATGCTTTCAGAGAAAGGCGAGCACTTGCTTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTCTCCTCCTAGTCGCATTTATATTTGGAAACACCTGCAAAAATATATTTGAAGCCATAATCTTCTTATTTGTGATGCATCCTTTTGATGTGGGTGATCGGTGTGAGATTGATGGAGTTCAGATGATAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGGGGCGACAACCAGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGCCCATTGGCAATTACTATCGTAGTCCTGACATGGGAGATTCAGTTGAATTCCTCGTCCATATTGCAACTCCAGCAGAGAAGATTGCCATCATAAGACAGAGAATATTAAGTTACATGGAGAGCAAGAAAGACCACTGGGCTCCTTCACCCATGGTTATTGTAAAGGACTTGGAGGGGTTGAACCAGCTGAGGGTGGCGGTTTGGATGAGCCACACAATAAACCACCAAAATATGGGGGAGAGGTGGACAAGGAGATGCCTTCTGGTCGACGAGATAGTCAAAATTCTGAGGGAGGTCGACATTGAGTATCGCATGATACCGTTGGACATCAACGTCCGCTCCATGCCCATGCCATCCCCTGTGACTTCCAGTCGCCTTCCCCCTTCCTGGACAGCTAGTGGCGGAAACTGA 1548 44.9 MWWDCKFKIWREPSYEFWRDGGEIERKSGGSFQFQQPLATEDPPSKLIGQFLHKQKASGDFSLDMDMEMEELRDEKSEPPMPENDIKRDNCDNPDGEVLMCTSNMEFQRKSTLLRNKTKSRLADRTEYVMKSGLVPKSGLLPKSGMLKSGLLGKSEEDEEDPETKNDSLKYLNHENVSAWNMKRLMHMVRHGSLATLDEQIHDSTHKDESATQIKSEHEAKIAARKIFHNVAKPNCKYIDLEDIMRFMREDEALKTMSLFEGASQSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVLLLVAFIFGNTCKNIFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRGDNQKIVFPNSTLATRPIGNYYRSPDMGDSVEFLVHIATPAEKIAIIRQRILSYMESKKDHWAPSPMVIVKDLEGLNQLRVAVWMSHTINHQNMGERWTRRCLLVDEIVKILREVDIEYRMIPLDINVRSMPMPSPVTSSRLPPSWTASGGN* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2109843 2121573 - Vvi3g216 Vvi3g216 783891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g216 515 MobiDBLite consensus disorder prediction 72 93 - -
Vvi3g216 515 Pfam Mechanosensitive ion channel 310 481 IPR006685 GO:0016020|GO:0055085
Vvi3g216 515 MobiDBLite consensus disorder prediction 152 167 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 92 164 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 156 310 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 81 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 310 512 - -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 81 IPR016688 -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 310 512 IPR016688 -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 156 310 IPR016688 -
Vvi3g216 515 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 92 164 IPR016688 -
Vvi3g216 515 MobiDBLite consensus disorder prediction 145 167 - -
Vvi3g216 515 SUPERFAMILY Sm-like ribonucleoproteins 324 384 IPR010920 -
Vvi3g216 515 Gene3D - 335 384 IPR023408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g216 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - vvi:100262278 689.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g216 Vvi18g152 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi15g811 . 14 371 Mechanosensitive Ion Channel Family AT4G00290 66.1 8.2e-143 504.2
Vvi18g513 . 9 505 Mechanosensitive Ion Channel Family AT5G10490 66.0 4.9e-183 638.3
Vvi18g514 . 9 518 Mechanosensitive Ion Channel Family AT5G10490 60.9 3.3e-171 599.0
Vvi18g513 . 6 505 Mechanosensitive Ion Channel Family AT1G58200 68.9 2.8e-194 675.6
Vvi18g514 . 6 504 Mechanosensitive Ion Channel Family AT1G58200 67.1 6.0e-189 657.9
Vvi18g152 ECH 113 698 Mechanosensitive Ion Channel Family AT1G53470 50.1 4.1e-161 565.8
Vvi3g216 ECH 148 509 Mechanosensitive Ion Channel Family AT1G53470 61.1 5.5e-134 475.7
Vvi3g220 . 150 534 Mechanosensitive Ion Channel Family AT1G53470 58.9 2.6e-131 466.8
Vvi3g216 ECH 155 514 Mechanosensitive Ion Channel Family AT3G14810 60.2 3.8e-132 469.5
Vvi3g220 . 174 539 Mechanosensitive Ion Channel Family AT3G14810 58.8 1.3e-127 454.5
Vvi3g216 ECH 167 516 Mechanosensitive Ion Channel Family AT1G78610 64.0 3.0e-137 486.5
Vvi3g220 . 191 536 Mechanosensitive Ion Channel Family AT1G78610 61.6 1.2e-130 464.5
Vvi3g216 ECH 167 510 Mechanosensitive Ion Channel Family AT2G17000 60.8 4.1e-118 422.9
Vvi3g220 . 193 535 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.6e-114 411.0
Vvi11g105 . 40 629 Mechanosensitive Ion Channel Family AT5G19520 53.0 2.9e-168 589.3
Vvi11g105 . 27 629 Mechanosensitive Ion Channel Family AT5G12080 55.5 3.1e-183 639.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2