Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g218 ATGAACTTTACATACAGCAGAGTGCCACGATTTGTCACATATTATAACAATATTCTACTATTCTTTGATCAGAGGTTGCTGCTCATCCTAGCATTCTCTTACAATGGTTTTTTTTCTGCATTGAAGGTCATAGAACACAAGCCATATGATCACAAAGTTGATGTTTTTAGTTTTGGAATTGTGTTATGGGAGTTGCTAATTGGAAAGCTTCCATACGAGTACTTAACCCCGTTACAAGCAGTTGTCCAAAAGGTAATACAACATAGAGCCCATGTCATCAATAATATTGATCATGTCACCAATAACCATCTAATTTCTTCTAGATGGTGGGTTGGGTTACTTTCCTCAGGATAA 354 36.44 MNFTYSRVPRFVTYYNNILLFFDQRLLLILAFSYNGFFSALKVIEHKPYDHKVDVFSFGIVLWELLIGKLPYEYLTPLQAVVQKVIQHRAHVINNIDHVTNNHLISSRWWVGLLSSG* 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2122898 2124044 - Vvi3g218 Vvi3g218 783893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g218 117 Pfam Protein tyrosine and serine/threonine kinase 38 88 IPR001245 GO:0004672|GO:0006468
Vvi3g218 117 SUPERFAMILY Protein kinase-like (PK-like) 32 87 IPR011009 -
Vvi3g218 117 PANTHER - 40 87 - -
Vvi3g218 117 Gene3D Transferase(Phosphotransferase) domain 1 33 112 - -
Vvi3g218 117 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g218 - - - vri:117909332 88.5817
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76561 PF07714 PK_Tyr_Ser-Thr 5.50E-08 CL0016 Vvi PK