Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g220 ATGACCAAAAAACAAAAAAGTCTAAACTACAAGATATGGAGAGAATCGAGCTATGACTTTTGGAGAGATGAGTGCGAGACTGAACGAAAAAGTGGTCCGAGATTTCAGTTCCAGCAGCCGTTGGCGACGGAGGATCCACCGTCTAAGCTGATTGGCCAGTTCTTACACAAACAGAAAGCGTTGGGTGATTTTTCTCTTGATATGGATATGGAGATGGAAGAGCTGAGAAATGAGAGGAAGAAACCTCCGACACCAGAGAGTACCATGCACCCAAAGATGTCGTCCATGGAGATGAAGTTATCGTTTCAACACCTGACCACCGGAGCAGCTGAAATGATCAGTTGTGACAATCCAGACGGTGAAGTTTTGAGGTGTACTTCAAACATGGAGTTTCAAAGGAAGTCGAGTTTGTTAAGAAACAAGACCAAGTCAAGGTTGGCAGATGGTCCAGAATATGTAATGAAGTCCGGTTTATTGCCCAAAACACGTCTGTTTCCAAAGTCTGGGGTGTTCAAATCAGGATTGTTGGGGATATCTGAGGAAGAAGAAGAAGATCCGGAGACAAAGAGCAATGCCCTTAAGTATCTTAATCATGAGAATGTTTCTGCCTGGAACATGAAGAGGTTAATGCATATGGTGCGACATGAGTCCCTTGCTACACTGGATGAGCAAATTCATGGTTCAACTCACGAGGACGAGCCTGCCACCCAGATTAAGAGTGAAGATGACGCAAAAATTGCCGCAAGGAAAATATTTCACAATGTGGCCAAGCCAAATTGCAAATTCATTTACCTGGAGGACATAATGCGCTTCATGCGAGAAGATGAAGCTTTGAGAACCATGAGTCTGTTTGATCAAGGAGCATCCCACAGTGAGAAAATCAGCAAGTCGGCCCTGAAGAACTGGGTGGTTAATGCTTTCAGAGAAAGGAGAGCACTTGCCTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTCTTCTCCTAGTCGTATTTATATTTGGGAACACCTGCAAAAATATATTTGAAGCCATAATCTTCGTATTCGTGATGCACCCTTTTGATGTGGGCGATCGGTGTGAGATTGATGGAGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGCCCATTGGCAATTTCTATCGTAGTCCTGACATGGGAGATGCAGTTGAATTCCTCGTCCATATTGCAACTCCAGCAGAGAAGATTGCCATGATAAGACAGAGAATATTAAGTTACATGGAGAGAAAGAAAGACCACTGGGCTCCTTCACCCATGGTTATTATAAAGGACTTGGAGGGTTTGAACCAGCTGAGGATGGCAGTTTGGATGGGCCACAAAATAAACCACCAAAATATGGGGGAGAGGTGGACAAGGAGATACCTTCTGATCGACGAGATAGTCAAAATTCTGAGGGAGGTCGACATTGAGTATCGCATGATACCATTGGACATCAACGTCCGCTCCATGCCCAAGCCATCTCCTGTGACATCCACTCGCCTTCCCCCTTCCTGGACAGCTAGTGGTGGTCGCTGA 1623 44.67 MTKKQKSLNYKIWRESSYDFWRDECETERKSGPRFQFQQPLATEDPPSKLIGQFLHKQKALGDFSLDMDMEMEELRNERKKPPTPESTMHPKMSSMEMKLSFQHLTTGAAEMISCDNPDGEVLRCTSNMEFQRKSSLLRNKTKSRLADGPEYVMKSGLLPKTRLFPKSGVFKSGLLGISEEEEEDPETKSNALKYLNHENVSAWNMKRLMHMVRHESLATLDEQIHGSTHEDEPATQIKSEDDAKIAARKIFHNVAKPNCKFIYLEDIMRFMREDEALRTMSLFDQGASHSEKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVLLLVVFIFGNTCKNIFEAIIFVFVMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRADNMKIVFPNSTLATRPIGNFYRSPDMGDAVEFLVHIATPAEKIAMIRQRILSYMERKKDHWAPSPMVIIKDLEGLNQLRMAVWMGHKINHQNMGERWTRRYLLIDEIVKILREVDIEYRMIPLDINVRSMPKPSPVTSTRLPPSWTASGGR* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2128295 2140641 - Vvi3g220 Vvi3g220 783895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g220 540 Gene3D - 360 409 IPR023408 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 336 537 IPR016688 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 91 IPR016688 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 116 186 IPR016688 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 182 336 IPR016688 -
Vvi3g220 540 MobiDBLite consensus disorder prediction 521 540 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 336 537 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 91 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 182 336 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 116 186 - -
Vvi3g220 540 SUPERFAMILY Sm-like ribonucleoproteins 349 409 IPR010920 -
Vvi3g220 540 PIRSF Memb_At2g17000 2 187 IPR016688 -
Vvi3g220 540 PIRSF Memb_At2g17000 172 338 IPR016688 -
Vvi3g220 540 PIRSF Memb_At2g17000 333 540 IPR016688 -
Vvi3g220 540 Pfam Mechanosensitive ion channel 335 506 IPR006685 GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g220 K22048 - vvi:104878206 682.559