Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g220 ATGACCAAAAAACAAAAAAGTCTAAACTACAAGATATGGAGAGAATCGAGCTATGACTTTTGGAGAGATGAGTGCGAGACTGAACGAAAAAGTGGTCCGAGATTTCAGTTCCAGCAGCCGTTGGCGACGGAGGATCCACCGTCTAAGCTGATTGGCCAGTTCTTACACAAACAGAAAGCGTTGGGTGATTTTTCTCTTGATATGGATATGGAGATGGAAGAGCTGAGAAATGAGAGGAAGAAACCTCCGACACCAGAGAGTACCATGCACCCAAAGATGTCGTCCATGGAGATGAAGTTATCGTTTCAACACCTGACCACCGGAGCAGCTGAAATGATCAGTTGTGACAATCCAGACGGTGAAGTTTTGAGGTGTACTTCAAACATGGAGTTTCAAAGGAAGTCGAGTTTGTTAAGAAACAAGACCAAGTCAAGGTTGGCAGATGGTCCAGAATATGTAATGAAGTCCGGTTTATTGCCCAAAACACGTCTGTTTCCAAAGTCTGGGGTGTTCAAATCAGGATTGTTGGGGATATCTGAGGAAGAAGAAGAAGATCCGGAGACAAAGAGCAATGCCCTTAAGTATCTTAATCATGAGAATGTTTCTGCCTGGAACATGAAGAGGTTAATGCATATGGTGCGACATGAGTCCCTTGCTACACTGGATGAGCAAATTCATGGTTCAACTCACGAGGACGAGCCTGCCACCCAGATTAAGAGTGAAGATGACGCAAAAATTGCCGCAAGGAAAATATTTCACAATGTGGCCAAGCCAAATTGCAAATTCATTTACCTGGAGGACATAATGCGCTTCATGCGAGAAGATGAAGCTTTGAGAACCATGAGTCTGTTTGATCAAGGAGCATCCCACAGTGAGAAAATCAGCAAGTCGGCCCTGAAGAACTGGGTGGTTAATGCTTTCAGAGAAAGGAGAGCACTTGCCTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTCTTCTCCTAGTCGTATTTATATTTGGGAACACCTGCAAAAATATATTTGAAGCCATAATCTTCGTATTCGTGATGCACCCTTTTGATGTGGGCGATCGGTGTGAGATTGATGGAGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGCCCATTGGCAATTTCTATCGTAGTCCTGACATGGGAGATGCAGTTGAATTCCTCGTCCATATTGCAACTCCAGCAGAGAAGATTGCCATGATAAGACAGAGAATATTAAGTTACATGGAGAGAAAGAAAGACCACTGGGCTCCTTCACCCATGGTTATTATAAAGGACTTGGAGGGTTTGAACCAGCTGAGGATGGCAGTTTGGATGGGCCACAAAATAAACCACCAAAATATGGGGGAGAGGTGGACAAGGAGATACCTTCTGATCGACGAGATAGTCAAAATTCTGAGGGAGGTCGACATTGAGTATCGCATGATACCATTGGACATCAACGTCCGCTCCATGCCCAAGCCATCTCCTGTGACATCCACTCGCCTTCCCCCTTCCTGGACAGCTAGTGGTGGTCGCTGA 1623 44.67 MTKKQKSLNYKIWRESSYDFWRDECETERKSGPRFQFQQPLATEDPPSKLIGQFLHKQKALGDFSLDMDMEMEELRNERKKPPTPESTMHPKMSSMEMKLSFQHLTTGAAEMISCDNPDGEVLRCTSNMEFQRKSSLLRNKTKSRLADGPEYVMKSGLLPKTRLFPKSGVFKSGLLGISEEEEEDPETKSNALKYLNHENVSAWNMKRLMHMVRHESLATLDEQIHGSTHEDEPATQIKSEDDAKIAARKIFHNVAKPNCKFIYLEDIMRFMREDEALRTMSLFDQGASHSEKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVLLLVVFIFGNTCKNIFEAIIFVFVMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRADNMKIVFPNSTLATRPIGNFYRSPDMGDAVEFLVHIATPAEKIAMIRQRILSYMERKKDHWAPSPMVIIKDLEGLNQLRMAVWMGHKINHQNMGERWTRRYLLIDEIVKILREVDIEYRMIPLDINVRSMPKPSPVTSTRLPPSWTASGGR* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2128295 2140641 - Vvi3g220 Vvi3g220 783895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g220 540 Gene3D - 360 409 IPR023408 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 336 537 IPR016688 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 91 IPR016688 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 116 186 IPR016688 -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 182 336 IPR016688 -
Vvi3g220 540 MobiDBLite consensus disorder prediction 521 540 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 336 537 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 91 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 182 336 - -
Vvi3g220 540 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 116 186 - -
Vvi3g220 540 SUPERFAMILY Sm-like ribonucleoproteins 349 409 IPR010920 -
Vvi3g220 540 PIRSF Memb_At2g17000 2 187 IPR016688 -
Vvi3g220 540 PIRSF Memb_At2g17000 172 338 IPR016688 -
Vvi3g220 540 PIRSF Memb_At2g17000 333 540 IPR016688 -
Vvi3g220 540 Pfam Mechanosensitive ion channel 335 506 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g220 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - vvi:104878206 682.559
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi15g811 . 14 371 Mechanosensitive Ion Channel Family AT4G00290 66.1 8.2e-143 504.2
Vvi18g513 . 9 505 Mechanosensitive Ion Channel Family AT5G10490 66.0 4.9e-183 638.3
Vvi18g514 . 9 518 Mechanosensitive Ion Channel Family AT5G10490 60.9 3.3e-171 599.0
Vvi18g513 . 6 505 Mechanosensitive Ion Channel Family AT1G58200 68.9 2.8e-194 675.6
Vvi18g514 . 6 504 Mechanosensitive Ion Channel Family AT1G58200 67.1 6.0e-189 657.9
Vvi18g152 ECH 113 698 Mechanosensitive Ion Channel Family AT1G53470 50.1 4.1e-161 565.8
Vvi3g216 ECH 148 509 Mechanosensitive Ion Channel Family AT1G53470 61.1 5.5e-134 475.7
Vvi3g220 . 150 534 Mechanosensitive Ion Channel Family AT1G53470 58.9 2.6e-131 466.8
Vvi3g216 ECH 155 514 Mechanosensitive Ion Channel Family AT3G14810 60.2 3.8e-132 469.5
Vvi3g220 . 174 539 Mechanosensitive Ion Channel Family AT3G14810 58.8 1.3e-127 454.5
Vvi3g216 ECH 167 516 Mechanosensitive Ion Channel Family AT1G78610 64.0 3.0e-137 486.5
Vvi3g220 . 191 536 Mechanosensitive Ion Channel Family AT1G78610 61.6 1.2e-130 464.5
Vvi3g216 ECH 167 510 Mechanosensitive Ion Channel Family AT2G17000 60.8 4.1e-118 422.9
Vvi3g220 . 193 535 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.6e-114 411.0
Vvi11g105 . 40 629 Mechanosensitive Ion Channel Family AT5G19520 53.0 2.9e-168 589.3
Vvi11g105 . 27 629 Mechanosensitive Ion Channel Family AT5G12080 55.5 3.1e-183 639.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2