Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g221 ATGGTGATGGAAGACAACGAGAGTTGCAGTAGCAGAGTTCACGATTCGTCGTCGCCGGCGCAGTCGCGGCAACAGCGCCAGAAGCTGGAGGTATACAATGAGGTTCTGCGTCGGCTCAAGGATTCCGACAACGAGGAGGCGTTTGAGCCTGGTTTCGACGAGGAACTGTGGGCTCACTTCGTTCGACTCCCCACTCGGTATGCTCTGGATGTGAATGTGGAGAGGGCTGAAGACGTTCTAACGCACAAGAGATTGCTGCATTTGGCGCATGATCCTACCAATAGGCCTGCAATTGAAGTTCGCCTTGTGCAGGTTCATCCTATATCTGATGGGATTCATGGGAACATAGCTGATTCTATTCATTCAAACTCTCCTACTATTGGGCCAGCCCATGGTTCTCCAAAGTACTCTAGCAAACAGAGCATTCTCCCACCACCTGCCTTTGGATCATCGCCTAATCTTGAGGCCCTTGCAATTGAAGCAAACAATTCTCATGTCCAAGATGGGGATGGGGATGATTCTGTACATGCTAGTTCACAGTATTCTCGGCCCATGCATGAAATCACATTTTCATCAGATGACAAGCCAAAACTCCTGAGTCAGTTGACTTGCTTGCTTTCTGAGCTTGAGCTCAACATCCAAGAAGCACATGCCTTTTCCACAGTGGATGGTTACTCCTTAGATGTCTTTGTTGTTGATGGATGGCCATATGAGGAAACAGAGCAGCTGAGAACTGCACTGGAAAAGGAAGTTTTTAAGATTGAGAAGCAATCTTGGCCAAATCATCATTCCTTATCTCCTACAGGCGAGCAAGAAGAAACAGGAATCAAATGCGAATCTGATTTTGTGACAATACCTAATGATGGGACTGATGTCTGGGAAATCGATGTTAGGCAGTTGAAATTTGAGAACAAAGTTGCATCGGGTTCATATGGTGATCTGTACAAAGGTACATACTGTAGTCAGGAAGTGGCAATTAAAGTCCTCAAGCCTGAGCGTTTAAATTCAGACATGCAGAAAGAGTTTGCACAGGAAGTCTTTATTATGAGGAAAGTTAGGCACAAGAATGTGGTACAGTTCATTGGTGCATGTACAAGGCCTCCAAGCTTATACATTGTGACAGAATTTATGTCTGGTGGAAGTGTGTATGACTATCTACACAAGCAAAAGGGTGTTTTTAAGCTTCCTGCATTGCTCAAAGTATCAATTGATGTTTCCAAGGGAATGAACTACTTGCACCAAAATAATATAATCCACAGGGATTTGAAAGCTGCCAATCTTCTGATGGATGAGAATGAAGTTGTTAAGGTAGCAGATTTTGGAGTTGCCAGAGTGAAAGCTCAATCTGGAGTTATGACTGCAGAAACTGGGACATATCGATGGATGGCTCCAGAGGTCATAGAACACAAGCCATATGATCACAAAGCTGATGTTTTTAGTTTTGGAATTGTGTTATGGGAGTTGCTAACTGGAAAGCTTCCATATGAGTACTTGACCCCATTACAAGCAGCCGTTGGAGTCGTCCAAAAGGGTCTCCGGCCAACCATGCCAAAGAACACTCATCCAAAGCTTGCAGAGTTGCTCGAGAGGTGCTGGCAACAAGATCCAACATTAAGACCCGACTTCTCTGAAATTATAGAGATTCTTCAGCAAATAGCCAAAGAGGTTGGAGATGAAGAAGACCGGCGCAAGGAGAAATCTTCTAGTGGATTCCTATCAGTTCTCAGACGTGGCCATCACTGA 1743 44.87 MVMEDNESCSSRVHDSSSPAQSRQQRQKLEVYNEVLRRLKDSDNEEAFEPGFDEELWAHFVRLPTRYALDVNVERAEDVLTHKRLLHLAHDPTNRPAIEVRLVQVHPISDGIHGNIADSIHSNSPTIGPAHGSPKYSSKQSILPPPAFGSSPNLEALAIEANNSHVQDGDGDDSVHASSQYSRPMHEITFSSDDKPKLLSQLTCLLSELELNIQEAHAFSTVDGYSLDVFVVDGWPYEETEQLRTALEKEVFKIEKQSWPNHHSLSPTGEQEETGIKCESDFVTIPNDGTDVWEIDVRQLKFENKVASGSYGDLYKGTYCSQEVAIKVLKPERLNSDMQKEFAQEVFIMRKVRHKNVVQFIGACTRPPSLYIVTEFMSGGSVYDYLHKQKGVFKLPALLKVSIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAVGVVQKGLRPTMPKNTHPKLAELLERCWQQDPTLRPDFSEIIEILQQIAKEVGDEEDRRKEKSSSGFLSVLRRGHH* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2141137 2162161 - Vvi3g221 Vvi3g221 783896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g221 580 CDD STKc_MAP3K-like 306 549 - -
Vvi3g221 580 Gene3D Transferase(Phosphotransferase) domain 1 379 573 - -
Vvi3g221 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vvi3g221 580 Gene3D Phosphorylase Kinase; domain 1 290 378 - -
Vvi3g221 580 SUPERFAMILY ACT-like 185 252 IPR045865 -
Vvi3g221 580 Coils Coil 237 257 - -
Vvi3g221 580 MobiDBLite consensus disorder prediction 12 28 - -
Vvi3g221 580 MobiDBLite consensus disorder prediction 1 28 - -
Vvi3g221 580 CDD ACT_TyrKc 185 251 - -
Vvi3g221 580 Pfam Protein tyrosine and serine/threonine kinase 300 549 IPR001245 GO:0004672|GO:0006468
Vvi3g221 580 Coils Coil 22 42 - -
Vvi3g221 580 SUPERFAMILY Protein kinase-like (PK-like) 288 549 IPR011009 -
Vvi3g221 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 13 563 - -
Vvi3g221 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 563 - -
Vvi3g221 580 ProSiteProfiles Protein kinase domain profile. 300 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g221 580 ProSiteProfiles ACT domain profile. 187 261 IPR002912 -
Vvi3g221 580 PRINTS Tyrosine kinase catalytic domain signature 374 387 IPR001245 GO:0004672|GO:0006468
Vvi3g221 580 PRINTS Tyrosine kinase catalytic domain signature 411 429 IPR001245 GO:0004672|GO:0006468
Vvi3g221 580 PRINTS Tyrosine kinase catalytic domain signature 457 467 IPR001245 GO:0004672|GO:0006468
Vvi3g221 580 PRINTS Tyrosine kinase catalytic domain signature 476 498 IPR001245 GO:0004672|GO:0006468
Vvi3g221 580 PRINTS Tyrosine kinase catalytic domain signature 520 542 IPR001245 GO:0004672|GO:0006468
Vvi3g221 580 SMART serkin_6 300 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g221 580 MobiDBLite consensus disorder prediction 557 580 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g221 Vvi18g154 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76563 PF07714 PK_Tyr_Ser-Thr 1.10E-74 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g221 - - vvi:100246860 1161.36