Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g222 ATGGAAAGTATATGTCTTGGTGGCTTTTGTCGTGTAACAGATTCTGGTTTCAAAACAATCCTGCACTCGTGCTCGACCTTATACAAGCTTAGGATTTTACTATTGGATGGGTCTGATATTACAGATGCGGGTTTGTCATACTTGAGAGAGGGAGTGATAGGCTCACTAGTTTCATTGTCCATTAGAGGGTGCAAAAGGCTTACGGATAAATGCATCTCTGCTCTATTTGATCCCTCTTCCAAACAGGAGTTGCAAGAATTGGACCTATCTAATCTTCCTAACCTATCTGATAATGGAATATTCTCGCTGGCTAAAAGTCGTGTTCCAATTCTTGAACTCAGGATGCGACAATGTCCACTCATAGGTGACAGTTCAATCATGGCATTAGCCTCAATGCAGGTTGACGATCATAGATCACATGGCAGTAGTTTGCGGGTGTTGGATCTTTATAACTGTGGTGGCATTACATCTCTTTCTTTCCGGTGGTTAAAGAACCCTTACTTTCCCAGACTGAGATGGTTGGGAGTGACAGGAAGCGTGAACAGAGACATGGTAGACGCTTTAGCTAGAAGTAGACCCTTCTTGCATGTGGCATGCCATGGTGAGGAGCTAGGGACTGACCACTGGGATGGTTTGTACATGCATGATAATGAAGAAATGGATGAACTTGAACAGTGGCTGCTCGAAGGAGGGGATGAGAGTGACGATGAAGAGATGGAAGAAGTTGAAAACAATGGAGAAATTGTCGAAGAGAGAGAGGGGCGGTCTGCCATGGCGTTCACAACCGCTCTATCGCTGCCCTCCGCTGCCCGCCTCCACCACCGCCTTCCGAACCGATCTTCTCTGAACCTACCACGCACAATTCGATGCACTTCTCCTTCAATTTCAGTCTCACCGTCAAAATCAATGCAGTTCGATCTCCGTTCCTACTGGACCACCCTGATTTCAGAGATCAACACCAAGCTCGAGGAAGCCATTCCGGTGAAGTATCCGCAACAGATCTACGAAGCCATGCGCTACTCCGTGCTAGCAAAAGGCGGGAAGCGAGCTCCCCCGGTGATGTGCGTCGCCGTCTGTGAGCTTTTCGGCGGCGACCGCCTTGCTGCCTTTCCGACCGCCTGTGCCCTAGAAATGGTTCACGCGGCTTCACTGATTCACGACGACCTTCCCTGCATGGACGATGACCCCTCCCGGCGGGGCCAGCCCTCGAACCACACCGTCTACGGCGTCGACATGGCCATTCTCGCCGGCGACGCCCTCTTCCCCCTCGGATTCCGCCACATCGTCTCCCACACCCCTTCCCACCTCGTCCCAGAGGGCCAGCTCATCCGCGTCATCGCGGAAATCGCCCGCTCCGTCGGCTCCACCGGCATGGCCGCCGGCCAGTTCCTCGACCTCGAGGGCGCCCCCAACTCCGTCGACTTCGTCCAGCGCAAGAAGTTCGGCGAGATGGCTGAGTGCTCCGCTGTTTGTGGCGGGTTCCTGGGCGGCGCCGCCGACGATGATATCCTACGCCTTAGGAGATACGGCCGAGCTGTCGGGATGTTGTACCAGGTGGTGGACGATAAGGCCATGGAAGTGGCGGAGGAGCTTCGAGCCAAGGCGAAGAGAGAGTTGAGTGGATTCGACAAGTATGGCGACAGCGTCGTTCCGCTTTACAGCTTTGTGGACTTCGCCGCGGAAAGAGGCTTTACCATCGATACTTCTATCGGGAGAGAGAGAATGGCGAATAGCGAAGCCGCCGGAGGGGCTCTGGAGCAGTTGCCGGCGGCACTGCTGGCAACGATCATGACGAAGCTCGACGTCTCCTCGATTCGCTCCCTAGCGTCCACGTGCACTACCATCCGCTCATGCGCTTCTCAAATCTTCCACTTCCTCCCCAATTTCCATCTCCTCGATGTTGCACTCTCAATCAACTTGCTGAGGCCTTTGCTGCCACCAAATCCTTATCTTAGGAGTTTGAAAGTTGATTGCAGTAAACTTGATGATTCATCAATTGAACATCTGGTTCGGCCATCTTTGCATGAGATTTCTCTCCTCAATTGTGCTGATTTTAGTGGGAGGCTGCTTTCTCTGATTGGAGGTCAATGCAAGGATTTAAGGTCTCTCTACTTGGGTTGTGTGGCTGAGAAAAGAGGACGAGCAGTCCATATTTCTAACCTTGAGGAGTTACTCTGTGGTTGCACTGAGTTAAAAACACTAAGCCTGATGTTCGATATTTCACTATTTCCTCGTTATAATTTTGCTCGAGCCTGGTCTTTGGCTTCAGAGAATCTCACAAGTCTTGAGATTGGCTATGTTTCTTCAGTTATGGTGACTGAACTGCTCAGCCCTAATGTGGGACCCCATCAGCCCCCAAATCATCTCCAGCCATCCATATTGCCGAGTCTTCAGAGATTGTGCCTCTCAGTGGATTATATTACTGACACTATGGTTGAGACAGTATCTAAATGTCTCATCAACTTAACTCATCTGGATCTTCGAGATGCACCCATCATTGAACCAAGAGTCACATTTGACCTCACAAACTCCGGTTTTCAACAGATTAATCAACGTGGGAAGTTGAAACACCTCTCCTTGGTTCGTAGCCAGGAGTTCCTAATTACATACTTCAAACGAGTTAACGATCTAGGAATCCTCCTAATGGCCGACAGATGCTCTAGTATGGAAAGTATATGTCTTGGTGGCTTTTGTCGAGTAACAGATTCTGGTTTCAAAACAATCCTGCACTCGTGCTCGACCTTATACAAGCTTAGGATTTTACTATTGGATGGGTCTGATATTACAGATGCGGGTTTGTCATACTTGAGAGAGGGAGTGATAGGCTCACTAGTTTCATTGTCCATTAGAGGGTGCAAAAGGCTTACGGATAAATGCATCTCTGCTCTATTTGATCCCTCTTCCAAACAGGAGTTGCAAGAATTGGACCTATCTAATCTTCCTAACCTATCTGATAATGGAATATTCTCGCTGGCTAAAAGTCGTGTTCCAATTCTTGAACTCAGGATGCGACAATGTCCACTCATAGGTGACACTTCAATCATGGCGTTAGCCTCAATGCAGGTTGACGATCATAGATCACATGGCAGTAGTTTGCGGGTGTTGGATCTTTATAACTGTGGTGGCATTACATCTCTTTCTTTCCGGTGGTTAAAGAACCCTTACTTTCCCAGACTGAGATGGTTGGGAGTGACAGGAAGCGTGAACAGAGACATGGTAGACGCTTTAGCTAGAAGTAGACCCTTCTTGCATGTGGCATGCCATGGTGAGGAGCTAGGGACTGACCACTGGGATGGTTTGTACATGCATGATAATGAAGAAATGGATGAACTTGAACAGTGGCTGCTCGAAGGAGGGGATGAGAGTGACGATGAAGAGATGGAAGAAGTTGAAAACAATGGAGAAATGACTTTACTTCAGACAGTCTCGGCTTGGTTTTCTGACTTGAACCTCCATCAGAAAGCCCTTCTGACAGTGCTGCTCCAGATTTGCTGGGCCATCAGGCCCAGGCACAGCTGCCCCCACCATCGGGTATATTCTTGCCAGAGAAGGCCCCTCAGTTGA 3564 49.47 MESICLGGFCRVTDSGFKTILHSCSTLYKLRILLLDGSDITDAGLSYLREGVIGSLVSLSIRGCKRLTDKCISALFDPSSKQELQELDLSNLPNLSDNGIFSLAKSRVPILELRMRQCPLIGDSSIMALASMQVDDHRSHGSSLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTGSVNRDMVDALARSRPFLHVACHGEELGTDHWDGLYMHDNEEMDELEQWLLEGGDESDDEEMEEVENNGEIVEEREGRSAMAFTTALSLPSAARLHHRLPNRSSLNLPRTIRCTSPSISVSPSKSMQFDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYSVLAKGGKRAPPVMCVAVCELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNSVDFVQRKKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVVDDKAMEVAEELRAKAKRELSGFDKYGDSVVPLYSFVDFAAERGFTIDTSIGRERMANSEAAGGALEQLPAALLATIMTKLDVSSIRSLASTCTTIRSCASQIFHFLPNFHLLDVALSINLLRPLLPPNPYLRSLKVDCSKLDDSSIEHLVRPSLHEISLLNCADFSGRLLSLIGGQCKDLRSLYLGCVAEKRGRAVHISNLEELLCGCTELKTLSLMFDISLFPRYNFARAWSLASENLTSLEIGYVSSVMVTELLSPNVGPHQPPNHLQPSILPSLQRLCLSVDYITDTMVETVSKCLINLTHLDLRDAPIIEPRVTFDLTNSGFQQINQRGKLKHLSLVRSQEFLITYFKRVNDLGILLMADRCSSMESICLGGFCRVTDSGFKTILHSCSTLYKLRILLLDGSDITDAGLSYLREGVIGSLVSLSIRGCKRLTDKCISALFDPSSKQELQELDLSNLPNLSDNGIFSLAKSRVPILELRMRQCPLIGDTSIMALASMQVDDHRSHGSSLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTGSVNRDMVDALARSRPFLHVACHGEELGTDHWDGLYMHDNEEMDELEQWLLEGGDESDDEEMEEVENNGEMTLLQTVSAWFSDLNLHQKALLTVLLQICWAIRPRHSCPHHRVYSCQRRPLS* 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2169179 2183369 - Vvi3g222 Vvi3g222 783897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g222 1187 Gene3D Ribonuclease Inhibitor 1 205 IPR032675 -
Vvi3g222 1187 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC 266 522 - -
Vvi3g222 1187 SUPERFAMILY RNI-like 626 862 - -
Vvi3g222 1187 Pfam F-box domain 586 620 IPR001810 GO:0005515
Vvi3g222 1187 Gene3D Farnesyl Diphosphate Synthase 304 572 IPR008949 -
Vvi3g222 1187 SMART LRR_CC_2 941 966 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 794 818 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 141 166 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 969 994 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 53 78 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 107 132 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 81 106 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 995 1020 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 1029 1054 IPR006553 -
Vvi3g222 1187 SMART LRR_CC_2 886 911 IPR006553 -
Vvi3g222 1187 SUPERFAMILY Terpenoid synthases 309 522 IPR008949 -
Vvi3g222 1187 Coils Coil 1186 1187 - -
Vvi3g222 1187 Pfam Polyprenyl synthetase 332 522 IPR000092 GO:0008299
Vvi3g222 1187 SUPERFAMILY RNI-like 9 178 - -
Vvi3g222 1187 SUPERFAMILY RNI-like 793 1066 - -
Vvi3g222 1187 CDD Trans_IPPS_HT 331 562 IPR000092 GO:0008299
Vvi3g222 1187 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 522 566 - -
Vvi3g222 1187 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 266 522 - -
Vvi3g222 1187 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC 522 566 - -
Vvi3g222 1187 Gene3D Ribonuclease Inhibitor 637 1041 IPR032675 -
Vvi3g222 1187 SFLD Isoprenoid Synthase Type I 335 522 - -
Vvi3g222 1187 ProSitePatterns Polyprenyl synthases signature 1. 384 400 IPR033749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g222 - - - vvi:100853822 895.575
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37