Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g225 ATGAACATTTTAACTAAAGACTTAAATAAGGCAACGAGGGACATGAAAACCTTGGAGGAGGAAGAAGAAGCAGAAGTTGGAATTGAGATGTGGAAGTACATATATGGATTTGCTGAAATGGCTGCAGTGAAGTGTGGCATTGAGCTAGGCATAGCTGATGTCATGGAAAGCCATGGAGGCCCCATCACTCTTTCTGCTTTGTCTTCTTCCCTGGGGTGCCCGCCTTCTGGTTTGAACCGGATCATGAGGTTCCTGGTGAGCCGGAGAATATTCAAGGAGGTGGCGACAAGCCAAGGCGATACAGGCTATCAACAAACACCCATGTCACGGTGCCTGATGACGAGCGGAGGAGATGGCATGGCTGCCTTTGTGTTGCTGGAGAGCAGCCCAGTGATGCTGGCTCCATGGCATGGCCTGAGCGCCCGGGTTCTAGGGAAAGGGAACTCAACGTTCGAGGCTGCGCACGGGGATGATATCTGGGGCTATGCAGCTAAAAACCCTGATCACAGCAAGCTTATAAATGATGCAATGGCTTCTAATGCTAGGAGGGTAGTGCCAGCAATGGTGAATGACTGTCCAGAGGTGTTTGATGGGGTGAGCACCCTGGTGGATGTAGGTGGGGGCAATGGCACCGCCCTGCGGACGTTGGTCAAGGCCTGCCCATGGATTAGAGGCATCAACTTTGATCTTCCTCATGTCGTGGCCACTGCTCCTAAATGTAACGATGTTGAGCATGTTGGAGGAAACATGTTCGACAGCGTCCCCAAAGCTGATGCTGTTTTCATCATGAAGGTCCTACATGATTGGGGAGATGAAAAGTGCATCAAGATCCTAGAAAAATGCAGAGAAGCCATTCCGGAGGACAAAGGGAAGGTGGTAATTGTAGAAGCCAAGGTCCTACATGATTGGGGAGATGAAAAGTGCATCAAGATCCTAGAAAAATGCAGAGAAGCCATTCCGGAGGACAAAGGGAAGGTGGTAATTGTAGAAGCCGTGATTGAAGATGGTGATCCTCAAGGTGATGATCAGAAGCTCAAGGATGTGAAGTTGATGGTAGACATGGTTATGATGGCACATACTACTACAGGCAAAGAAAGGACCTTCAAGGAATGGGACTACGTCCTTCTCAATGCTGGTTTTAGTCGATATACCATAAAACCTATTCGCAATATTGTGCAGTCTATCATTGAAGCATACCCTTAG 1203 48.55 MNILTKDLNKATRDMKTLEEEEEAEVGIEMWKYIYGFAEMAAVKCGIELGIADVMESHGGPITLSALSSSLGCPPSGLNRIMRFLVSRRIFKEVATSQGDTGYQQTPMSRCLMTSGGDGMAAFVLLESSPVMLAPWHGLSARVLGKGNSTFEAAHGDDIWGYAAKNPDHSKLINDAMASNARRVVPAMVNDCPEVFDGVSTLVDVGGGNGTALRTLVKACPWIRGINFDLPHVVATAPKCNDVEHVGGNMFDSVPKADAVFIMKVLHDWGDEKCIKILEKCREAIPEDKGKVVIVEAKVLHDWGDEKCIKILEKCREAIPEDKGKVVIVEAVIEDGDPQGDDQKLKDVKLMVDMVMMAHTTTGKERTFKEWDYVLLNAGFSRYTIKPIRNIVQSIIEAYP* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2202700 2207438 - Vvi3g225 Vvi3g225 783900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g225 400 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 400 IPR016461 GO:0008168
Vvi3g225 400 Gene3D - 12 112 IPR036388 -
Vvi3g225 400 Coils Coil 1 21 - -
Vvi3g225 400 PIRSF O-mtase 8 299 IPR016461 GO:0008168
Vvi3g225 400 PIRSF O-mtase 297 400 IPR016461 GO:0008168
Vvi3g225 400 Pfam Dimerisation domain 42 86 IPR012967 GO:0046983
Vvi3g225 400 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 296 IPR029063 -
Vvi3g225 400 SUPERFAMILY Winged helix DNA-binding domain 21 115 IPR036390 -
Vvi3g225 400 Pfam O-methyltransferase domain 136 297 IPR001077 GO:0008171
Vvi3g225 400 Gene3D Vaccinia Virus protein VP39 299 400 IPR029063 -
Vvi3g225 400 Gene3D Vaccinia Virus protein VP39 117 298 IPR029063 -
Vvi3g225 400 PANTHER O-METHYLTRANSFERASE 16 297 IPR016461 GO:0008168
Vvi3g225 400 PANTHER O-METHYLTRANSFERASE 299 393 IPR016461 GO:0008168
Vvi3g225 400 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 299 393 - -
Vvi3g225 400 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 16 297 - -
Vvi3g225 400 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 299 399 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g225 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - vvi:100264018 689.493
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140