Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g229 ATGGAGGCGATGCATGCGCCGGTGTACTTCGAGAAGTACGAGATTCACGGGGATATGAAGACGGTGCCACCGGAGGTGATGGAGTCGATTCACAAGAACAAGGTGTGTTTGAAGGGAGGTTTGTCGACGCCGGTGGGCGGTGGTGTGAATTCGTTGAATGTTCAGCTGAGGAAGGAGCTCGACCTTTATGCCTCGCTTGTGAATTGCTGCAATTTGCCTGGTTTGCCGACGCGGCACAATGATGTTGATATTGTTGTGGTGAGGGAGAACACGGAGGGCGAGTACGCTGGGCTTGAGCACGAGGTCGTTCCCGGCGTGGTCGAAAGCCTTAAGGTGATTACAAAGTTCTGCTCCGAACGAATTGCAAAATATGCCTTTGAGTATTCTTACCTAAACAACCGAAAGAAAGTGACAGCTGTGCACAAAGCCAACATTATGAAACTTGCAGACGGTCTCTTCTTAGAATCCTGTCGGGAAGTTGCGAAAAATTACCCCAGTATTGCATACAGCGAAATTATTGTGGATAACTGCTGCATGCAACTGGTTTCAAAGCCGGAGCAATTTGATGTCATGGTGACACCTAATCTTTATGGAAATCTGGTGGCAAATACTGCAGCTGGTATTGCAGGAGGCACTGGTGTCATGCCAGGAGGCAATGTGGGTGCTGATCACGCCATTTTTGAGCAAGGTGCTTCAGCGGGAAATGTTGGTAATGAAAAGATAGCACAGCAAAAGAAGGCAAATCCAGTGGCTTTGCTCCTCTCATCAGCCATGATGCTGAGGCATCTCCAATTTCCTTCATTTGCTGATCGACTAGAGACTGCTGTGAAAACTGTAATCTCAGAGGGCAAGTACAGGACAAAAGATCTTGGTGGGACAAGCACCACCCAGGAGGTTGTTGATGCTGTCATTGCAGCTCTAGACTGA 927 48.54 MEAMHAPVYFEKYEIHGDMKTVPPEVMESIHKNKVCLKGGLSTPVGGGVNSLNVQLRKELDLYASLVNCCNLPGLPTRHNDVDIVVVRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYSYLNNRKKVTAVHKANIMKLADGLFLESCREVAKNYPSIAYSEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAIFEQGASAGNVGNEKIAQQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKTVISEGKYRTKDLGGTSTTQEVVDAVIAALD* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2231718 2242474 + Vvi3g229 Vvi3g229 783904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g229 308 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 306 - -
Vvi3g229 308 SMART Iso_dh_2 1 303 IPR024084 -
Vvi3g229 308 PANTHER ISOCITRATE DEHYDROGENASE [NAD] REGULATORY SUBUNIT 1, MITOCHONDRIAL-LIKE 1 306 - -
Vvi3g229 308 Gene3D Isopropylmalate Dehydrogenase 1 307 - -
Vvi3g229 308 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 1 306 IPR004434 GO:0006099
Vvi3g229 308 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 4 307 - -
Vvi3g229 308 Pfam Isocitrate/isopropylmalate dehydrogenase 16 303 IPR024084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g229 K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] - vvi:100253697 601.668
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g229 . . . . . . . . . . . Cma20g00719 . Car20g00620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00717 . . . . Cpe16g00346 Cpe05g01341 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001945 2 2 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 2 67