Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g23 ATGAAGGAGATCATGATGTTTACGGGGCCTGCCACGGGTCTGTGGATATGTGGACCTTTGATGAGTCTTATTGATACAGCTGTTATTGGTCAGGGAAGCTCGGTTGAGCTTGCTGCTTTGGGCCCAGGCACAGTTGTATGTGATTATATGAGTTATGTTTTCATGTTCCTTTCTATTGCTACTTCCAATATGGTTGCGACTTCACTTGCTCGACAGGATAAAAATGAAGTGCAACATCAGATATCTACCTTGCTCTTTGTTGGGTTTACCTGTGGTGTGCTGATGCTCCTTTTTACAAAATTCCTGGGTGCATGGGCACTAACTGTTTTTACGGGGCCAAAGAATGCTCATATTGTACCTGCGGCAAATGTATATGTTCAGATTCGGGGCTTAGCATGGCCAGCAGTTCTTGTTGGATGGGTTGCTCAAAGTGCAAGTCTTGGCATGAAAGATTCATGGGGACCTTTGAAGGCTTTGGCAGTTGCCAGTGCTATAAATGGCATCGGTGATATTGTCCTTTGCAGTTTCTTAGGCTATGGTATTGCTGGTGCAGCATGGGCAACGATGGTGTCACAAGTCATTGCTGGTTATATGATGATTGAAGCTCTGAACAAGAAAGGATATAATGCTTTCGCCTTCTCTGTTCCATCACTTGATGAATTTGTGCAGATATTGGGGCTTGCTGCTCCAGTGTTTGTAACAATGATGTCAAAGGTGGCTTTCTACTCTTTCCTTATATATTTTGCTACATCTATGGGCACACACACTCTTGCTGCTCATCAGGTCATGAGTCAATTGTACAGCATGTGTACAGTTTGGGGTGAGCCTCTCTCACAAACCGCACAATCATTCATGCCTGAGTTGATATATGGAGTCAATCGAAATCTGGCGAAGGCCCGAATGCTGCTGAAGTCACTTTTGATTATGGGAGCTTTAGTTGGATTGACACTCGGAACAATTGCGATAGCTATTCCATGGCTATTCCCTAATATTTTTACACATGATGGTGAGGTCATACATGAGATGCACAAGGTGTTGATTCCATACTTTCTTGCATTAGTTGTGACACCCTCTACTCACAGTCTGGAGGGAACTTTGCTGGCTGGACGGGAGCTTAGATTCATTAGTTTATCAATGAGTGGATGCTTTTCTTTAGGTGGTCTTTTACTATTGTTTGTGTACAGTAGAGGATATGGATTGTCAGGCTGCTGGTTTGGCCTCGTAGCATTCCAATGGGCACGATTTTTTCTCGCCCTCCAGCGACTTTTTTCTCCAAATGGCATACTTTACTCAGAAGATTTAAACCAGTCTGATCTTGGGAAGCTCAAAGCTGTATAG 1338 43.72 MKEIMMFTGPATGLWICGPLMSLIDTAVIGQGSSVELAALGPGTVVCDYMSYVFMFLSIATSNMVATSLARQDKNEVQHQISTLLFVGFTCGVLMLLFTKFLGAWALTVFTGPKNAHIVPAANVYVQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVASAINGIGDIVLCSFLGYGIAGAAWATMVSQVIAGYMMIEALNKKGYNAFAFSVPSLDEFVQILGLAAPVFVTMMSKVAFYSFLIYFATSMGTHTLAAHQVMSQLYSMCTVWGEPLSQTAQSFMPELIYGVNRNLAKARMLLKSLLIMGALVGLTLGTIAIAIPWLFPNIFTHDGEVIHEMHKVLIPYFLALVVTPSTHSLEGTLLAGRELRFISLSMSGCFSLGGLLLLFVYSRGYGLSGCWFGLVAFQWARFFLALQRLFSPNGILYSEDLNQSDLGKLKAV* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 380764 396708 - Vvi3g23 Vvi3g23 783698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g23 445 CDD MATE_DinF_like 1 424 IPR044644 -
Vvi3g23 445 Pfam MatE 18 166 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi3g23 445 TIGRFAM matE: MATE efflux family protein 12 404 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi3g23 445 PANTHER PROTEIN DETOXIFICATION 1 434 - -
Vvi3g23 445 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 1 434 IPR044644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g23 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100243426 863.988
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g23 . Blo15g00670 . . . . . Bma12g00542 . . Cma02g00367 Cma20g00814 Car02g00235 Car20g00698 . . . . . . . . . . . . . . . . . . . Cone3ag1216 Cone10ag1100 . . Chy11g00340 . . . . . Bpe15g00846 . . . Sed01g0267 Cmo02g00372 Cmo20g00822 . . . . . . Bhi10g01948 Tan05g1245 . . Hepe08g0980 . . . . . . . . . . Csa02g01303 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63