Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g230 ATGGAGAGGAAGGTAGCCATCATAGGAGCTGGCATCAGTGGCCTCCTTGCCTGCAAGTATACCCTCTCCAAAGGCTTCACTCCGGTTGTTTTCGAGTCCCGGAGCAGCATCGGCGGAGTATGGAGGAAGACACTAGAGACTACAAAGCTCCAAACACCCAAACCATTCTACCAGTTCTCAGATTTCCCATGGCCATCTTCAGTGAAAGAAGAGTTCCCTAACCAGTTCCAATTGTTCGATTATCTGCAGTCCTATGCTCGCCATTTCGACTTGCTCAGGCACATCAAGTTCAATAGTAAGGTGGTGAGTATCGAGTATGAAGGGGCTTCAGATGAAGAGATGCAGGCATGGGAGCTGTGGGGAGGCAATGGTGAGGCGTTCAGCTCTAAAGGGAAATGGAACCTTACTGTGACCGACACACAGATCCTTTCAACTGAGGTTTACCAAGTGGACTTTGTTATTCTCTGCATTGGACGGTTCACAGATGTTCCAAACATCCCAGAATTTCCCCCCGGTAAAGGCCCAGAGGCGTTCCATGGAAAGGTGATACATTCCATGGAGTATTCCGCCATGGATTTTGCAAGTGCAGCAGAATTCATCGAAGGGAAACGAACAGCTGTGGTTGGTTTCCAGAAACACGCACTGGACATATCGATGGAGTGTTCAGCAGCAAATGGAGAGCAAAATCCATGCAGACTGTTATACAAGACTGAGCACTGGAACGTCCCTGATTATCAGCCATGGGGAGTGCCACTGGCTTATCTGTATTTTAGTCGCTTCTCAGAGCTTCTAGTTCATAAGCCTGGTGAAGGGTTCTTTCTGAGTCTCCTAGCAACCATTCTTTCACCTGTGAGATGGGGATTCTCAAAGTGGGTGGAATCTCATATAAAGAAGAAGCTGTCCCTAGAAAAGTTTGGGATGGTACCAAAACATAGCTTTCTCAAAGAGATTAGCGCTTGTTTGATCTCAACAGTGCCAGAGGGGTTCTATGATAGAGTTGAAAAGGGAAGCATCATTTTGAAGAAAGCTCCAAAGTTTAGCTTCTGCGAACAAGGCATTGTGGTTGATGGCGAGACCACTCCTATAGAAACGGATTTGGTCATTCTGGCTACTGGATTCAAGGGAGAGAAGAAGCTAAAAGATATATTCGTGTCCCCTGCCTTCCAGGACTGCATCCTTGGGTCACCAACCGCATCGGTTCCATTCTATAGGGAATGCATTAACCCTCGAATTCCACAGCTAGCGGTAATTGGATTCTCGGAGAGTATTTCAAACCTGTACACATCGGAGATGAGGTGCCGGTGGCTAGCAGAACTTCTTGACAGCACATTCAAGCTGCCAAGCATTAAAGAGATGGAGAAAGATGCAGCAAGATGGGACAAGTATATGAAGCAATCCTCCGGCGAGTACTACCGGAGATCATGCATAGGTGCTCTGCATATCTGGTACAATGATCAACTCTGCAAGGACATGGGGTGGAACCCTAAGAGAAAGAAGGGATTTTTTGCAGAATTGTTTGAGCCTTATGTCCCAAGTGATTACTGCCCATCCTAA 1554 46.98 MERKVAIIGAGISGLLACKYTLSKGFTPVVFESRSSIGGVWRKTLETTKLQTPKPFYQFSDFPWPSSVKEEFPNQFQLFDYLQSYARHFDLLRHIKFNSKVVSIEYEGASDEEMQAWELWGGNGEAFSSKGKWNLTVTDTQILSTEVYQVDFVILCIGRFTDVPNIPEFPPGKGPEAFHGKVIHSMEYSAMDFASAAEFIEGKRTAVVGFQKHALDISMECSAANGEQNPCRLLYKTEHWNVPDYQPWGVPLAYLYFSRFSELLVHKPGEGFFLSLLATILSPVRWGFSKWVESHIKKKLSLEKFGMVPKHSFLKEISACLISTVPEGFYDRVEKGSIILKKAPKFSFCEQGIVVDGETTPIETDLVILATGFKGEKKLKDIFVSPAFQDCILGSPTASVPFYRECINPRIPQLAVIGFSESISNLYTSEMRCRWLAELLDSTFKLPSIKEMEKDAARWDKYMKQSSGEYYRRSCIGALHIWYNDQLCKDMGWNPKRKKGFFAELFEPYVPSDYCPS* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2246283 2248846 + Vvi3g230 Vvi3g230 783905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g230 517 PIRSF FMO 1 505 IPR000960 GO:0050660|GO:0050661
Vvi3g230 517 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1-RELATED 4 515 - -
Vvi3g230 517 Gene3D - 2 249 IPR036188 -
Vvi3g230 517 Pfam Flavin-binding monooxygenase-like 3 496 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi3g230 517 SUPERFAMILY FAD/NAD(P)-binding domain 356 514 IPR036188 -
Vvi3g230 517 Gene3D - 341 507 IPR036188 -
Vvi3g230 517 PANTHER DIMETHYLANILINE MONOOXYGENASE 4 515 - -
Vvi3g230 517 SUPERFAMILY FAD/NAD(P)-binding domain 2 225 IPR036188 -
Vvi3g230 517 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g230 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - vvi:100248597 1071.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi10g01244 . . . . . . . . . . . . . . . . Cme11g01078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000621 2 8 2 2 1 4 2 5 5 4 3 5 4 3 4 4 4 1 1 3 4 3 2 4 4 3 1 4 3 7 102