Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g235 ATGGAGAGGAAGGTGGGCATCATAGGAGCGGGAATCAGCGGCCTCCTAGCCTGCAAGTATACCCTCTCCAAGGGCTACACGCCGGTCGTCTTTGAGTCCCGGAGCAGTATCGGGGGAGTATGGACCAAGACACTCGAGACTACCAAGCTACAAACACCCAAACCAATCTTCCAATTCTCTGACTTTCCATGGCCGTCTTCAGTAGTTGAAGATTTTCCTAGCCATTCCCAAGTTCTTGATTATCTTCAGTCCTATGCCCATCATTTTGGCTTGCTCCGCCACATCAAATTCAACTCTAAAGTCCTCAGCATCGCCTATGAAGGCCCACCGGAGGAGGAGATGCAGGCATGGGAGCTGTGGGGTGGCGCCGGTGATCCCTTTGGCTCTAAAGGGAAGTGGAATCTTACTGTAAACGACACACACAACCTCTCAACTGAGGTTTGCCAAGTGGATTTTCTTATCCTCTGCATCGGACGGTTCAGCGATGTGCCCAACATCCCAGAATTTCCAGCGGGCAAAGGCCCAGAAATGTTCCATGGAAAGGTCATACATTCCATGGAGTATGCAGCCATGGATTTCGCGAGAGCAGCTGAATTCATCAAAGGGAAAAGAACAACTGTGGTTGGATTCCAGAAACATGCCCTGGACATCGCTATGGAGTGCTCAACAGCAAATGGAGAGGAACATCCATGTAGAGTCTTGTACAAGACGGAGCACTGGACTGTCCCGGATTTCCAACCATGGGGGGTACATCTAGCTCTTCTGTATCTTAACCGCTTCTCGGAGCTTCTGATTCATAAGCCTGGTGAAGGGTTCCTCCTCAGCCTCCTGGCAACCATTCTTTCACCTGTGAGATGGGGGTTCTCCAAGTTTGTCGAATCTTATATAAAGAGGAAACTGTCCCTTGAAAAGTTCGGGATGGTACCAAAACACAGCTTTCTCAATCAGATCAGCTCTTGTTTGATCTCAATAGTGCCAGAGGGGTTCTATGACAGAGTAGAAAAGGGAAGTATCCTTTTGAAGAAAGCTCCCAAGTTTGGCTTCTGCAAAGAAGGAATTGTGGTAGATGGCGAGAGCACACCTCTAGAGACGGATTTGGTCATATTGGCAACCGGGTTCAAAGGAGATGAGAAGCTCAAAGACATTTTTGTGTCTCCAACCTTCAGAGACTACATTGTCGGCTCTCCAACTGCATCTCTTCCACTCTACAGGGAATGCATTCATCCTAGAATTCCACAGCTAGCGGTGATTGGATTCTCAGAGAGTGTTTCAAATTTGTACACATCGGAGATGAGGTGCCGGTGGGTAGCAGAGCTTCTTGATGGCAGATTCAAGCTGCCAAGCATTAAGGAGATGGAGAAAGATGCAGAAAGATGGGACAAATACATGAAGCAATACTCCGGTGAATACTACAGGAGATCATGCATAGGTGCTGTTCATGTATGGTACAATGATCAACTCTGTAAGGACATGGGATGGAATCCTAAGAGAAAGAAGGGATTCATTCCTGAACTGAGCGCCGAGGAGGAGTTGCAGGCGTGGGAGCTATGGGGTGGTAATGCAGAGCCTTTCAGTTCTAAAGGGAAGTGGAGGATCACTGTAGAGAACACCCAGAGACTCTCAACTGAGGTGTGTGTATTTTGGATGAAAAGAAGATATCTGTGCCAGCACACAGAGAGGACAAGGAAAAGGACAGCACAAGTTTTTGAGTACCAAGGGACAAGGGCAAGGAATAGGACAAGCTTACCCATGCAATGCAGAATGTTATACAAGACCAAGCACTGGAGTCTACCTGATTACCAACCATGGGGAATACCTCTAGTTTATCTGTATTTTAATCGCTTTTCGGAGCTTCTGACTGCTCCTCTGGAGACAGATTTGGTCATATTGGCTACTGGGTTCAAGGGAGATGAGAAGCTGAAGGACATGTTTGTGTCCCCTGCCTTCAAGGACTGCATCCTCGGCTCCCCAACTGCATCAGTTCCACTCTATAGGGAATGCATTCATCCTCGAATCCCACAACTAGCGGTGATTGGATGCTCAGAGAGTATCTCAAACTTACATCAGAAATGA 2073 47.71 MERKVGIIGAGISGLLACKYTLSKGYTPVVFESRSSIGGVWTKTLETTKLQTPKPIFQFSDFPWPSSVVEDFPSHSQVLDYLQSYAHHFGLLRHIKFNSKVLSIAYEGPPEEEMQAWELWGGAGDPFGSKGKWNLTVNDTHNLSTEVCQVDFLILCIGRFSDVPNIPEFPAGKGPEMFHGKVIHSMEYAAMDFARAAEFIKGKRTTVVGFQKHALDIAMECSTANGEEHPCRVLYKTEHWTVPDFQPWGVHLALLYLNRFSELLIHKPGEGFLLSLLATILSPVRWGFSKFVESYIKRKLSLEKFGMVPKHSFLNQISSCLISIVPEGFYDRVEKGSILLKKAPKFGFCKEGIVVDGESTPLETDLVILATGFKGDEKLKDIFVSPTFRDYIVGSPTASLPLYRECIHPRIPQLAVIGFSESVSNLYTSEMRCRWVAELLDGRFKLPSIKEMEKDAERWDKYMKQYSGEYYRRSCIGAVHVWYNDQLCKDMGWNPKRKKGFIPELSAEEELQAWELWGGNAEPFSSKGKWRITVENTQRLSTEVCVFWMKRRYLCQHTERTRKRTAQVFEYQGTRARNRTSLPMQCRMLYKTKHWSLPDYQPWGIPLVYLYFNRFSELLTAPLETDLVILATGFKGDEKLKDMFVSPAFKDCILGSPTASVPLYRECIHPRIPQLAVIGCSESISNLHQK* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2307661 2312585 + Vvi3g235 Vvi3g235 783910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g235 690 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1-RELATED 588 619 - -
Vvi3g235 690 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1-RELATED 4 504 - -
Vvi3g235 690 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1-RELATED 623 688 - -
Vvi3g235 690 SUPERFAMILY FAD/NAD(P)-binding domain 356 505 IPR036188 -
Vvi3g235 690 Coils Coil 449 469 - -
Vvi3g235 690 Gene3D - 1 175 IPR036188 -
Vvi3g235 690 PANTHER DIMETHYLANILINE MONOOXYGENASE 623 688 - -
Vvi3g235 690 PANTHER DIMETHYLANILINE MONOOXYGENASE 588 619 - -
Vvi3g235 690 PANTHER DIMETHYLANILINE MONOOXYGENASE 4 504 - -
Vvi3g235 690 Pfam Flavin-binding monooxygenase-like 3 496 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi3g235 690 Gene3D - 176 250 IPR036188 -
Vvi3g235 690 SUPERFAMILY FAD/NAD(P)-binding domain 2 227 IPR036188 -
Vvi3g235 690 Gene3D - 351 509 IPR036188 -
Vvi3g235 690 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g235 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - vvi:100250364 1042.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g235 . Blo15g00431 Bda06g00437 . . . . . . . Cma02g00293 . Car02g00172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3471 Cmo02g00287 . . . . . . . Bhi10g01237 Tan05g1065 Cmetu11g0158 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000621 2 8 2 2 1 4 2 5 5 4 3 5 4 3 4 4 4 1 1 3 4 3 2 4 4 3 1 4 3 7 102