Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g237 ATGGGTTCTGCTACTCTGCTTCTCGCCCTATTCTTCCTCTCCGTGCTCACCACTGTGCCCAAAGTTCAGGCAGCCTTCACCTGTAACTCCACCACCAGGTCCACCACCTGCAGCGCTCTCATCGACTACGTCTCCCCCAACACCACCACTCTATCTGCCATCCAGACTCTCTTCGACGTCAAAAACCTTCGAACTCTACTCGGCGCCAACTCCCTCCCGACCTCGACCTCGCCGAACCAAAGCGTAGCCGCGAAGGACAAGATCGTCATCCCCTTCCGCTGCCGCTGCTCTAACGGAACCGGAATTTCGAACCACCGGCCGGTGTACACTGTGCAGAAGGACGACGGACTGTACCACATCGCGGCGGAGGTGTTCGCGGGACTGGTTACGTATCAGGAGATTCAGGCGGTGAACAACATTTCGGATGCGAATTTGATTGAAGTAGGGCAAGAGCTATGGATTCCGCTGCCGTGTAGCTGCGATGAGGTGAATGGATCGAAGGTGGTGCACTACGGGCATGTGGTGGAAGCCGGGAGCTCCGTGGAGCTGATTGCGGAGGAGTACGGCACCACTCAGGAGACGTTGTTGAGGCTCAACGGCATTACAGATCCCAAGAATCTTCAGGCCGGTGCTGTTCTTGATGTTCCTCTCAAAGCTTGTACATCAATGGTAGCAAATAACAACTCATTAGACTATCCTTTACTTGTCGCTAATGGTACATATGTCTACACCGCCAACAGTTGTGTAATGTGCAAGTGTGATTCTGCGAACAACTGGACATTACAATGTGAGCCATCCCAGCTTAAGCTATCCAATAGAACGTGCCCTAGCATGCAATGTGAAGGTAGCAGTTTGTATATAGGCAACAGCACCTCTGCTGGTTGTAACCGAACGACCTGTGCCTATGCTGGTTACACCAGTCAAATGATCCTCACAACCCTTGTTGAGGGGAACGCTTGTTCAGCTAGTAATGATGCTCAAAAGATCGGTCTACAAGTCTGGAGCTGGGCCTTCCTTTTCATCTCGTCAATTGCTCTCGCTTGGTCTTCAATTTTTTCAGTAAGATCTCTGTAG 1074 51.68 MGSATLLLALFFLSVLTTVPKVQAAFTCNSTTRSTTCSALIDYVSPNTTTLSAIQTLFDVKNLRTLLGANSLPTSTSPNQSVAAKDKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLIEVGQELWIPLPCSCDEVNGSKVVHYGHVVEAGSSVELIAEEYGTTQETLLRLNGITDPKNLQAGAVLDVPLKACTSMVANNNSLDYPLLVANGTYVYTANSCVMCKCDSANNWTLQCEPSQLKLSNRTCPSMQCEGSSLYIGNSTSAGCNRTTCAYAGYTSQMILTTLVEGNACSASNDAQKIGLQVWSWAFLFISSIALAWSSIFSVRSL* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2334481 2338229 - Vvi3g237 Vvi3g237 783912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g237 357 Gene3D LysM domain 162 229 IPR036779 -
Vvi3g237 357 SUPERFAMILY LysM domain 108 156 IPR036779 -
Vvi3g237 357 Pfam LysM domain 109 155 IPR018392 -
Vvi3g237 357 Pfam LysM domain 173 216 IPR018392 -
Vvi3g237 357 CDD LysM 108 154 IPR018392 -
Vvi3g237 357 ProSiteProfiles LysM domain profile. 171 215 IPR018392 -
Vvi3g237 357 SMART LysM_2 172 216 IPR018392 -
Vvi3g237 357 SMART LysM_2 108 155 IPR018392 -
Vvi3g237 357 CDD LysM 173 215 IPR018392 -
Vvi3g237 357 Gene3D LysM domain 104 161 IPR036779 -
Vvi3g237 357 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Vvi3g237 357 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 321 - -
Vvi3g237 357 SUPERFAMILY LysM domain 172 216 IPR036779 -
Vvi3g237 357 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g237 - - - vvi:100262384 701.819
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g237 . 16 313 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 51.3 1.3e-78 290.4
Vvi18g278 . 20 381 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.4 1.9e-153 539.3
Vvi18g278 . 20 381 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 63.7 6.5e-133 471.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012966 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 2 1 1 0 0 1 1 2 0 1 2 2 2 28