Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g238 ATGCCAGCTGTCACCCTCCTTAGGAAAAATATTTGTCTTTTAGCCAGCTTCAAATGCAGCTCCGGCCCCACCTGTAACGCTCTCGTCGGCTACGTCTCCCCCAACACCACCACTCTATCCGCCATCCAGACTCTCTTCGGCGTCAAAAACTTTCGAACTCTACTCGGCGCCAACTCCCTCCCGGCCTCGACCCCAACGAACCAAAGCGTAGCCGCGAAGGACAAGATCGTCATCCCCTTCCGCTGCCGCTGCTCTAACGGAACCGGAATTTCGAACCACCGGCCGGTGTACACTGTGCAGAAGGACGACGGACTGTACCACATCGCGGCGGAGGTGTTCGCGGGACTGGTGACGTATCAGGAGATTCAGGCGGTGAACAACATTTCGGATGCGAATTTGATTGAAGTAGGGCAAGAGCTGTGGATTCCGCTGCCGTGTAGCTGCGATGAGGTGAATGAATCGAAGGTGGTGCACTACGGGCACGTGGTGGAATCCGGAAGCTCCGTGGCGGAGATCGCGGAGAAGTACGGAACCACCGAAGAGACGCTGTTGGAGCTCAACAACATTACAGATCCCAAGAATCTTAAGGCCGGTGATGTCCTTGATGTTCCCCTCAAAGCTTGTACTTCTGTGGTAAAGAACACCTCATTGGACTACCCATTACTCCTCTCTAATGGTACTTATGCCTACACTGCAAACAATTGTGTGAAGTGCCAGTGTTATTCTGCAAACAACTGGACATTACAATGTGAGCAATCCGGGCTTAATATAACAAATGGAACGTGCCCTAGCATGGAATGTGGGAGTAGTGGTTTATCCATTGGCAACTCCACATCTACCACTTGTAACAGGACAACCTGTGCCTATGCTGGTTACACCAACCAAACAATCTTCACAAGCCTTGTTGAGTCCACTTGTTCATCTACTAACAATGCTCCCAGCTATGCTTCGAAAATCACTCTGCCCAGTTGGAGATGGAACTTTGTTTTCATAGTAAGCCAATTGGTTATGCTTTATCTTCATCATTCCCAAGAGCCCAGATTCCAGCATTTCAACAAGAGCTTTCGTTGTCATTGCCAAAGGGAGGAATACATCATTAGTTGA 1104 49.91 MPAVTLLRKNICLLASFKCSSGPTCNALVGYVSPNTTTLSAIQTLFGVKNFRTLLGANSLPASTPTNQSVAAKDKIVIPFRCRCSNGTGISNHRPVYTVQKDDGLYHIAAEVFAGLVTYQEIQAVNNISDANLIEVGQELWIPLPCSCDEVNESKVVHYGHVVESGSSVAEIAEKYGTTEETLLELNNITDPKNLKAGDVLDVPLKACTSVVKNTSLDYPLLLSNGTYAYTANNCVKCQCYSANNWTLQCEQSGLNITNGTCPSMECGSSGLSIGNSTSTTCNRTTCAYAGYTNQTIFTSLVESTCSSTNNAPSYASKITLPSWRWNFVFIVSQLVMLYLHHSQEPRFQHFNKSFRCHCQREEYIIS* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2338608 2344688 - Vvi3g238 Vvi3g238 783913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g238 367 CDD LysM 96 142 IPR018392 -
Vvi3g238 367 SUPERFAMILY LysM domain 160 204 IPR036779 -
Vvi3g238 367 SMART LysM_2 96 143 IPR018392 -
Vvi3g238 367 SMART LysM_2 160 204 IPR018392 -
Vvi3g238 367 ProSiteProfiles LysM domain profile. 95 142 IPR018392 -
Vvi3g238 367 SUPERFAMILY LysM domain 96 144 IPR036779 -
Vvi3g238 367 Pfam LysM domain 161 204 IPR018392 -
Vvi3g238 367 Pfam LysM domain 97 143 IPR018392 -
Vvi3g238 367 ProSiteProfiles LysM domain profile. 159 203 IPR018392 -
Vvi3g238 367 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 305 - -
Vvi3g238 367 Gene3D LysM domain 92 151 IPR036779 -
Vvi3g238 367 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 305 - -
Vvi3g238 367 CDD LysM 161 203 IPR018392 -
Vvi3g238 367 Gene3D LysM domain 152 216 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g238 - - - vvi:100257272 668.692
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g238 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012966 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 2 1 1 0 0 1 1 2 0 1 2 2 2 28