Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g239 ATGGCCAACGCTCCCGATAATAAGCTCACTTCCTCAAGCTCCGAGCTCGACTTGGATCGCCCCAATCTCGAAGACTACCTTCCCTCCGGATCCATGCAAGAACCTCGCGGCAAGCTTCGCCTGCGTGATTTATTGGACATTTCGCCGACCCTAACCGAGGCTGCTGGGGCCATTGTTGACGACTCTTTCACACGATGTTTCAAGTCGAACCCTCCGGAGCCTTGGAACTGGAATGTGTATTTGTTTCCTCTTTGGTGTTTGGGAGTGGTAATTCGATATGGAATTTTATTTCCCACAAGGGTTCTAGTACTCACACTGGGGTGGATAATATTCCTTTCATCCTTTATTCCAGTACATTTTCTATTGAAGGGAAACGATAAGTTGAGGAAAAAGTTGGAGAGATGTCTAGTGGAGTTAATTTGCAGCTTCTTTGTTGCATCATGGACTGGAGTTGTCAAGTACCATGGGCCACGGCCTAGCAGGAGGCCTCAGCAGGTTTTTGTTGCCAATCATACTTCCATGATTGATTTTATCGTTTTAGAACAGATGACTGCATTTGCAGTTATTATGCAGAAGCATCCTGGCTGGGTTGGATTGCTGCAAAGTACCATTTTGGAGAGTGTAGGATGTATCTGGTTCAATCGTACAGAAGCAAAGGACCGTGAAATTGTTGCTAGGAAGCTAAGGGATCATGTTCAGGGGGCTGACAACAACCCTCTTCTCATATTCCCAGAAGGAACTTGTGTGAATAACCACTACACTGTCATGTTCAAGAAGGGCGCATTCGAACTTGGCTGCACTGTTTGCCCTATTGCAATAAAGTACAATAAGATTTTCGTTGATGCTTTCTGGAACAGTAAGAAGCAATCCTTTACAATGCATCTTCTGCAGCTTATGACATCCTGGGCTGTCGTTTGTGATGTTTGGTACTTAGAGCCCCAAACATTGAAGCCAGGAGAGACACCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTCTTCGAGCTGGTTTGAAAAAGGTTCCTTGGGATGGATATTTGAAGTACTCTCGCCCTAGCCCAAAGCATAGAGAGCAGAAGCAGCAGAGCTTTGCTGATTCAGTGTTACGGCGCCTGGAAGAGAAGTGA 1131 45.8 MANAPDNKLTSSSSELDLDRPNLEDYLPSGSMQEPRGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNPPEPWNWNVYLFPLWCLGVVIRYGILFPTRVLVLTLGWIIFLSSFIPVHFLLKGNDKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSRRPQQVFVANHTSMIDFIVLEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRTEAKDREIVARKLRDHVQGADNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSKKQSFTMHLLQLMTSWAVVCDVWYLEPQTLKPGETPIEFAERVRDIISLRAGLKKVPWDGYLKYSRPSPKHREQKQQSFADSVLRRLEEK* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2346117 2352506 - Vvi3g239 Vvi3g239 783914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g239 376 PANTHER ACYLTRANSFERASE-LIKE 16 368 - -
Vvi3g239 376 MobiDBLite consensus disorder prediction 352 376 - -
Vvi3g239 376 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 16 368 - -
Vvi3g239 376 CDD LPLAT_LPCAT1-like 140 350 IPR045252 GO:0008374
Vvi3g239 376 SMART plsc_2 165 276 IPR002123 GO:0016746
Vvi3g239 376 MobiDBLite consensus disorder prediction 1 17 - -
Vvi3g239 376 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 96 284 - -
Vvi3g239 376 MobiDBLite consensus disorder prediction 1 34 - -
Vvi3g239 376 Pfam Acyltransferase 152 273 IPR002123 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g239 K13506 GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4 [EC:2.3.1.15] - vvi:100243463 778.474
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00601 Blo13g00482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006377 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38