Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g242 ATGGGGTGTACGACTTCTAAGATTGATGATCTCCCGGCGGTGGCGCTTTGCCGAGAGAGATGTGCTTGCTTGGATGACGCGATACAGCAAAGGTACACTTTTGCGGCGTATCATGTGGCGTATATGAAGAGCTTGCAGGTGATTGGAGGGTCATTGCAGGAATTTTTTGACCTGGATCTTGATGGGTCAGCAGTGTCGCCGGTGCTGCCGCTGCCGGTTCAGAAAAAAGGAGATCATGAGGTTCAGAGGGAAATCAAACTCAAGGCTGAGCCCTCGGGCTTGTCGCCGGCGGCGGCTGCGTTGAACGACCGTTCGAATTCGAATTCCGGTTCATTTCCGAGAGGGTTCATGAATGTGAACATGAATTTCATGAAAAATCAGGCCACACAGTCGGTGACGTACCAGCACCGGCCGGCGAGTCCTGAAAAGATGCACATGGGCGAAGCTTCGTACTACCCATATGCCTATCCGAACAATAATCCTAGTTCTTACCCCTACGGTTATGGTGGTGGAAATTACGGCTACTATGGCCAGCAGCCGCAGCAGCCCTCGGCTTGGGACTTCTTTAACCCTTTCGAGAGTTATGATAAATACTATCCTCCATATACCCCTAGTAGAGACTCGAAAGATTTGAGAGAGGAGGAGGGTATTCCTGATTTGGAAGATGAGGATTATCTGCATGAAGTTGTGAAGGAAATTCACGGAAATCAGAAGTTTGTGGATGGCGGTGGAGGTGGTGGCAATTACGCAAAGATGATGGAGAATCAGAGCGAGAAGGTGGATAATATGGATGCCCATTATCAGAGACAGAGTGTTTCAGCGGATAACGACAGAGTGGAGTATGAAGTGCATATGTTGGAGAAGAAGGTGGTTGATAGTGAGGAGAAGGCCGGAGATCGGGGTAATGTGGCTGCATTCAAAGCTCGTGGCGGGCCTCGGGGTATGTACGAGGTGGTGAGGGAAATTCAGGTTCAGTTTGTGAGAGCTTCAGAGTGTGGAAATGAGCTTGCCAAAATGCTGGAGGTGGGAAAGCACCCATACCACCCAAAAAATCAAGTTTCTTCGAAGATGTTGCATGCCATTTCTCCTTCGGTAGCCGCTTTAGTATCCTCACAGCCTGCTACTTCCAAAAATGCCGAGTCCTCGGCTTCCGGTGAGAAGGCTGATCCTATGGAGTTGGAATTTGATGGAGGTGCCGGGATGAGATCAGGAAATCTCTCTTCTACCTTACAAAAGCTGCATCTTTGGGAGAAGAAACTCTATGATGAAGTCAAGGTTGAGGAAAAAATGAGAGTAGCCCATGAGAGGAAGAGTCGGAAGTTGAAGCGTCTGGATGAAAGGGGTGCTGAGGCTCACAAAGTTGATTCGACCAGAAGTATGATCAGGAGTCTTTCCACAAAAATAAGAATTGCCATTCAGGTTGTTGAAAAGATTTCTCTAAAGATAAATAAGTTAAGAGATGATGAGTTGTGGCCACAACTAAATGAATTAATTCAAGGCCTAACCAGGATGTGGAAATCTATGCTTGAATGTCACCGTAGTCAGTGTCAAGCAATCCGAGAAGCTAGAAATTTAGATGTCATTTCATCTCACAAGCTTAGTGACGCCCATCTTGATGCCACATTGCGGCTTGAACGTGATCTTCTTCACTGGACTTCAATGTTCTCTAGTTGGATTGCTGCCCAGAAGGGTTATGTCAGAGCCTTGAATAATTGGCTCGTAAAATGTCTTCTATATGAGCCAGAAGAAACAGCAGATGGAATAGCTCCCTTCTCTCCTGGGAGGGTGGGTGCACCTCCTGCATTTGTAATTTGCAATCAGTGGTCACAAGCTATGGATAGGATTTCTGAGAAAGAAGTTGTGGACTCTATTCGTGTTTTTGCCAAGAGTATTTTTCAGCTTTGGGAACGGGGTAGACTAGAAATGCGCCAGAGGGCGCTGGTTGATAAGGATTTAGAGCGGAAAGTTAAGGACTTGGATAGGGAGGACCAGAAGATTCAGAAGGAGATTCAAGCCTTGGACAAAAAGATGGTTCCGATTGCAGGGCACAGTGACGGCCTCGCATTAGCTGGACATCTTGTGTACCAAAGTGAAACCAGCAGTAATAATAGTATACATGCGAATTTGCAACATATTTTTGAATCCATGGAGAGGTTCACAGCTAACTCCTTGAGAGCCTATGAGGAGCTTTTACAACGAATTGAAGAAGATAAGCTTGCTGAGGCATGA 2229 46.66 MGCTTSKIDDLPAVALCRERCACLDDAIQQRYTFAAYHVAYMKSLQVIGGSLQEFFDLDLDGSAVSPVLPLPVQKKGDHEVQREIKLKAEPSGLSPAAAALNDRSNSNSGSFPRGFMNVNMNFMKNQATQSVTYQHRPASPEKMHMGEASYYPYAYPNNNPSSYPYGYGGGNYGYYGQQPQQPSAWDFFNPFESYDKYYPPYTPSRDSKDLREEEGIPDLEDEDYLHEVVKEIHGNQKFVDGGGGGGNYAKMMENQSEKVDNMDAHYQRQSVSADNDRVEYEVHMLEKKVVDSEEKAGDRGNVAAFKARGGPRGMYEVVREIQVQFVRASECGNELAKMLEVGKHPYHPKNQVSSKMLHAISPSVAALVSSQPATSKNAESSASGEKADPMELEFDGGAGMRSGNLSSTLQKLHLWEKKLYDEVKVEEKMRVAHERKSRKLKRLDERGAEAHKVDSTRSMIRSLSTKIRIAIQVVEKISLKINKLRDDELWPQLNELIQGLTRMWKSMLECHRSQCQAIREARNLDVISSHKLSDAHLDATLRLERDLLHWTSMFSSWIAAQKGYVRALNNWLVKCLLYEPEETADGIAPFSPGRVGAPPAFVICNQWSQAMDRISEKEVVDSIRVFAKSIFQLWERGRLEMRQRALVDKDLERKVKDLDREDQKIQKEIQALDKKMVPIAGHSDGLALAGHLVYQSETSSNNSIHANLQHIFESMERFTANSLRAYEELLQRIEEDKLAEA* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2403126 2409026 + Vvi3g242 Vvi3g242 783917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g242 742 Coils Coil 276 296 - -
Vvi3g242 742 MobiDBLite consensus disorder prediction 369 393 - -
Vvi3g242 742 PANTHER UNCHARACTERIZED 1 740 - -
Vvi3g242 742 Pfam Protein of unknown function (DUF632) 315 631 IPR006867 -
Vvi3g242 742 MobiDBLite consensus disorder prediction 369 383 - -
Vvi3g242 742 Coils Coil 649 676 - -
Vvi3g242 742 Pfam Protein of unknown function (DUF630) 1 57 IPR006868 -
Vvi3g242 742 PANTHER RNA POLYMERASE SUBUNIT BETA, PUTATIVE (DUF630 AND DUF632)-RELATED 1 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g242 - - - vvi:100264167 1384.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00823 . . . Blo04g00600 . . . . . . . Sed01g0639 . . . . . . . . Bhi10g01233 Tan05g1068 Cmetu11g1383 . Hepe08g0331 . . . . . . . . . . . . Cme11g01221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004039 1 1 3 3 2 1 2 1 1 1 1 1 2 1 0 2 1 3 2 1 1 1 1 1 1 1 1 3 1 2 43