Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g243 ATGGGCTGCTGTGAATCGTCGTTCCTTACAGAGACACACCCAGAAAAAGATGACCAGCATCACCACAACAACAGCCACAATACCCAGAACCCACCCTTCAGCCCTCCCTCCCCTGCCGACGGGGGAGTCCCATCCTTCTCCGAGTTCTCCTTCTCGGACCTTAAGGCAGCTACTAATAACTTCAGCTCTGACTCCATCGTCTCCGAGAGCGGCGAGAAGGCCCCCAATATCGTCTACAAGGGTCGCCTCCAGAACCGTCGGTGGATCGCCGTGAAGAAATTTACGAAGATGGCGTGGCCGGACCCGAAGCAGTTCGCTGAGGAGGCTTGGGGTGTTGGGAGGTTGCGGCATCAGAGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTGGGAAAATCAAACCATTGAATGGGCCATGCGTTTGAGAGTAGCCCTTTTCATTGCTGAAGCCTTGGATTTTTGTAGTACTGAAAGCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAAGAAATGGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCATGCTCTTGATTTGATAAGGGACAAAAATATCATCCTTCTGATGGACTCACATTTGGAGGGAAACTTCTCTACAGAAGAAGCAACAACCGTTGTTGGTCTTGCCTCTCAATGTTTGCAATATGAACCTAGAGAGCGGCCTAATACAAAGGACCTTGTTGCAACACTTGCCCCACTGAAAACCAAACCTGATGTTCCATCTTACGTCATGCTTGGGATTCCAAAGCATGAGGATGCCCCACCAACCCCACAGCACCCTCTATCACCAATGGGTGAGGCCTGTTCACGACTGGACCTCACAGCAATCCATCAGATCTTGGTTATGACACACTACAGAGATGATGAAGGAACCAATGAGTTGTCCTTCCAAGAATGGACCCAACAGATGAGAGATATGCTAGAAGCAAGGAAGCGTGGGGACTTTGCATTCCGTGACAAGGATTTTAAAACTGCCATTGATTGTTATTCTCAGTTTGTAGATGTGGGAACCATGGTGTCCCCAACTGTTTATGCACGGCGCAGTCTATGCTATCTGCTGTGTGACCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCCCAATGCGTCTACCCAGACTGGCCTACGGCCTTCTACATGCAATCAGTGGCTCTTGCCAAATTGGACATGCACAAGGATGCTGCTGACATGCTAAATGAAGCTGCTGGACTTGAAGAGAAGAGGCAAAAAGGTGGGAGAGGATCATGA 1503 48.17 MGCCESSFLTETHPEKDDQHHHNNSHNTQNPPFSPPSPADGGVPSFSEFSFSDLKAATNNFSSDSIVSESGEKAPNIVYKGRLQNRRWIAVKKFTKMAWPDPKQFAEEAWGVGRLRHQRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALFIAEALDFCSTESRSLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDLIRDKNIILLMDSHLEGNFSTEEATTVVGLASQCLQYEPRERPNTKDLVATLAPLKTKPDVPSYVMLGIPKHEDAPPTPQHPLSPMGEACSRLDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMRDMLEARKRGDFAFRDKDFKTAIDCYSQFVDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAGLEEKRQKGGRGS* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2413496 2420431 + Vvi3g243 Vvi3g243 783918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g243 500 Gene3D Tetratricopeptide repeat domain 389 498 IPR011990 GO:0005515
Vvi3g243 500 ProSiteProfiles Protein kinase domain profile. 64 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g243 500 SUPERFAMILY TPR-like 394 490 IPR011990 GO:0005515
Vvi3g243 500 MobiDBLite consensus disorder prediction 1 41 - -
Vvi3g243 500 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED 1 499 - -
Vvi3g243 500 MobiDBLite consensus disorder prediction 10 24 - -
Vvi3g243 500 Pfam Protein tyrosine and serine/threonine kinase 78 315 IPR001245 GO:0004672|GO:0006468
Vvi3g243 500 Gene3D Phosphorylase Kinase; domain 1 40 139 - -
Vvi3g243 500 Gene3D Transferase(Phosphotransferase) domain 1 141 331 - -
Vvi3g243 500 SUPERFAMILY Protein kinase-like (PK-like) 42 325 IPR011009 -
Vvi3g243 500 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 499 IPR045845 GO:0004672|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g243 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - vvi:100265782 1022.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g243 . . . . Bpe07g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1227 . Lsi10g00824 . . . . . . . . . . . . . . . . . . . . Bhi10g01232 . . . . . . . . . . . . . . . . Cme11g01222
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000526 3 6 2 3 3 3 6 3 3 3 3 3 6 3 3 6 3 5 6 3 3 3 3 3 2 3 3 6 5 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76564 PF07714 PK_Tyr_Ser-Thr 6.70E-25 CL0016 Vvi PK