Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g25 ATGGGCAGTTTGGGAGCGATTTTGACGCATCCGGATGACATATACCCACTGCTGAAGCTGAAAATGGCGGTACGCCACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGGCCTTCTGCTACACTCTGCTCCACAAGGTCTCTCGCAGCTTCGGTCTCGTCATTCAACAGCTCGGCACCGAGCTCCGCAACGCCATATGCATTTTCTATTTGGTTCTTCGAGCACTCGACACTGTTGAGGATGATACAAGCATTCGTACAGATGTCAAAGTGCCTATTCTGATAGCTTTTCATCGTCATATATATGACCGTGACTGGCATTTTGCATGTGGTACAAAGGACTACAAGGTTCTCATGGACCAATTCCATCATGTTTCAACTGCTTTTCTGGAGCTTGAAAGAGGTTATCAGGAGGCAATTGAAGACATCACCAAACGAATGGGGGCAGGAATGGCAAAATTTATTTGCAAAGAGGTGGAAACCATTGATGACTATGATGAATATTGCCACTATGTAGCAGGACTTGTTGGATTAGGATTGTCCAAGCTTTTCCATGCCTCCAAGTTGGAAGATTTGGCTTCTGATGAACTCTCCAACTCAATGGGTTTATTTCTTCAGAAAACAAATATAATCCGAGATTATCTGGAGGATATAAATGAGATCCCAAAGTCACGCATGTTTTGGCCCCGTGAGATTTGGAGTAAATATGTTAACAAACTTGAGGACTTGAAAGAGGAGGAAAACTCAATCAAAGCAGTGCAATGCTTGAATGACATGGTCACTAATGCTTTAATACATATGGAAGATTGCCTGACATACATGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCAGAGGAGTAGTAAAAATGAGGCGTGGTCTTACTGCCAAAGTTATTGACAGAACAAAAGCGATGTCTGATGTCTATGGTGCTTTCTTCGATTTTTCTTGTATGCTGAAGTCCAAGGTTGACAAGAATGACCCGAATGCTACAAAAGCATTGAGCAGGCTAGAAGCAGTACAGAAAATTTGCAGGGAATCTGGAGCCCTTACCAAAAGGAAATCCTATGTAATCAGGAGCGAACCAAGATATAATTCAGCTCTGATTGTGGCATTCTTCATCATACTGTCCATCATTTTCGCGTATCTATCTGCCAACCGTCAGAATAATTAA 1242 43.32 MGSLGAILTHPDDIYPLLKLKMAVRHAEKQIPPEPHWAFCYTLLHKVSRSFGLVIQQLGTELRNAICIFYLVLRALDTVEDDTSIRTDVKVPILIAFHRHIYDRDWHFACGTKDYKVLMDQFHHVSTAFLELERGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASKLEDLASDELSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKEEENSIKAVQCLNDMVTNALIHMEDCLTYMSALQSPAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKAMSDVYGAFFDFSCMLKSKVDKNDPNATKALSRLEAVQKICRESGALTKRKSYVIRSEPRYNSALIVAFFIILSIIFAYLSANRQNN* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 415126 427415 + Vvi3g25 Vvi3g25 783700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g25 413 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Vvi3g25 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 410 IPR044844 GO:0004311
Vvi3g25 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Vvi3g25 413 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Vvi3g25 413 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 410 - -
Vvi3g25 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Vvi3g25 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Vvi3g25 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Vvi3g25 413 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Vvi3g25 413 SFLD Isoprenoid Synthase Type I 36 325 - -
Vvi3g25 413 SUPERFAMILY Terpenoid synthases 36 366 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g25 K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] - vvi:100265798 831.632
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g25 . . . Bda08g00956 . Bpe12g00091 Bma05g00429 . . . Cma02g00366 Cma20g00812 Car02g00234 Car20g00697 . . . . . . . . . . . . . . . . . . . Cone3ag1214 . Lsi10g00413 . Chy11g00339 . Blo04g00536 Blo13g00537 Bda15g01071 Bda14g00577 Bpe15g00845 Bpe05g00322 Bma03g00571 Bma08g00783 Sed01g0264 Cmo02g00370 Cmo20g00820 . . . . Cpe16g00273 Cpe05g01289 Bhi10g01944 Tan05g1241 Cmetu11g1041 . Hepe08g0978 . . . . . . . . . . Csa02g01305 . Cme11g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004532 3 1 3 3 3 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 2 1 42