Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g253 ATGGCTATCTTTCTATGCTTCCTCTTCTTCCTCATCTCCTCTGCAACTGCCTGCGATCGCTGTGTGCACCACACCAAGGTTGCTTACTTCTCCAAAGCCTCAGCACTCTCATCTGGGGCTTGTGGGTATGGCTCATTGGCGTTAGGCTTCTATGGTGGGCACCTTGCAGCTGGTGTTCCCTCACTGTTCAAAGATGGAGCTGGCTGTGGTGCATGTTTTCAGATAAGATGCAAGAACACCACTCTCTGCAGCAGAGCAGGGACTACTGTGATATTAACTGATCTCAATCGCAACAACCAAACAGACTTTGTTCTCAGCAGCAGAGCTTTCACGGCCATGGCCAACAAGGGCATGGGCCAACAGATTCTCAAGCTTGGGCTTGTGGACGTCGAATACAAGAGGGTGCTATGCAATTACAATAAACAGAATTTAGCGATTCGGGTGGAAGAAATGAGCCAAAAGCCACATTATCTAGCAATTAAAGTTCTGTACCAAGGTGGACAGACAGAAATTGTGGGCATGGATGTAGCTCAGGTTGATTCATCAAGATGGACCTACATGACAAGAAACTATGGCGCAATTTGGGACACCAGTAATGTCCCATCTGGGCCACTGCAACTCAGGTTTGTAGTCACGGGCGGGTACGATGGAAAGTGGGTTTGGGCAAAGAAGGTGCTTCCTGCTGATTGGAAAGTTGGGGAGACCTATGATGCTGGAGTTCAGATCAGTGATATAGCACAGGAGCCTTGTTATCCCTGCGACAACGAAAACTGGAAATGA 780 48.33 MAIFLCFLFFLISSATACDRCVHHTKVAYFSKASALSSGACGYGSLALGFYGGHLAAGVPSLFKDGAGCGACFQIRCKNTTLCSRAGTTVILTDLNRNNQTDFVLSSRAFTAMANKGMGQQILKLGLVDVEYKRVLCNYNKQNLAIRVEEMSQKPHYLAIKVLYQGGQTEIVGMDVAQVDSSRWTYMTRNYGAIWDTSNVPSGPLQLRFVVTGGYDGKWVWAKKVLPADWKVGETYDAGVQISDIAQEPCYPCDNENWK* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2486947 2488738 - Vvi3g253 Vvi3g253 783928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g253 259 Pfam Lytic transglycolase 56 132 IPR009009 -
Vvi3g253 259 Gene3D - 12 138 IPR036908 -
Vvi3g253 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Vvi3g253 259 PANTHER EXPANSIN-B3 5 255 - -
Vvi3g253 259 SUPERFAMILY PHL pollen allergen 143 237 IPR036749 -
Vvi3g253 259 Pfam Expansin C-terminal domain 145 227 IPR007117 -
Vvi3g253 259 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Vvi3g253 259 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Vvi3g253 259 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Vvi3g253 259 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Vvi3g253 259 PRINTS Major pollen allergen Lol pI signature 214 231 IPR005795 GO:0005576|GO:0019953
Vvi3g253 259 Gene3D - 139 242 IPR036749 -
Vvi3g253 259 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Vvi3g253 259 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Vvi3g253 259 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Vvi3g253 259 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Vvi3g253 259 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Vvi3g253 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Vvi3g253 259 SUPERFAMILY Barwin-like endoglucanases 6 140 IPR036908 -
Vvi3g253 259 PANTHER EXPANSIN-LIKE A1-RELATED 5 255 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g253 - - vvi:100258952 533.102