Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g254 ATGGAAGGCTTGAAGCTCGGACACACTCTGCAGAATAGCCATGGCTTGAACCTTCTTGTCCAAATTCCAAATTCAAGCTTAGTTTCCAGACCATCTTTCCCAATTCAACCCAAATGCAACCTGGCTCTTTCCACAGGTTGCCGGGTTTATGCTGGCTCTATAATCAGAAAACTAGCCCTCATTTCTCCCAGTGGTTTGCCCTGTGGACATTCCAATCTGAAGCAAACAAGGGAAGTACGATTTACCACAAGAAGCACATCAGCATCAATACAGCCTATGACTGAGGAACTGGTAGAGGACAAGTCCAAGGATCTCCCAACAAGTGGTGATTCTATACGGCACCGATTTCTCGATTTCTATGCTTCTCGTGGGCACAAGGTTCTTCCAAGTTCTTCTCTTGTGCCAGATGATCCCACAGTTCTACTGACAATTGCAGGAATGCTTCAATTCAAGCCTATATTCCTTGGAAAGGTTCCCAGACAAGTACCTCGTGCTACAACTGCTCAAAGGTGCATACGTACCAATGATGTGGAGAACGTAGGTAAAACATCTCGACACCATACTTTCTTTGAGATGCTTGGGAACTTCAGCTTTGGAGATTACTTCAAGAAGGAAGCAATTAAATGGGCATGGGAGCTTTCAACAATAGAGTATGGATTGCCAGCTGACAGATTATGGATTAGTGTTTATGAAGATGATGATGAAGCTTTAGCAATATGGACCAAAGAGGTGGGTGTTCCTGTGGAGCGCATAAAGAGGATGGGTGCTGAGGACAACTTCTGGACCAGTGGAGTGACTGGTCCCTGTGGTCCATGCTCTGAGATTTATTACGATTTCCATCCTGAGCGGGGATATTCGGATGTTGATCTAGGTGATGACACTAGGTTTATAGAGTTTTACAACCTGGTTTTCATGCAATACAACAAAAAAGATGATGGATCACTGGAACCCCTCAAACAGATGAATATAGATACTGGGCTTGGCCTAGAGCGTATGGCTCGCATCCTTCAGAAGGTTCCAAACAATTACGAGACTGACTTAATTTATCCTATCATAGAGAAAGCCTCAGAATTGGCAAATGTCTCGTATGCTCTTGCTGATGATCATGCAAAAATGAACCTTAAGGTTATTGGAGATCATTTGCGTGCAATTGTTTATCTCATATCAGATGGTGTTGTTCCATCAAATATTGGAAGAGGTTATGTGGCTCGGCGGCTTATCAGAAGAGCTGTTCGAACTGGAAGGTTACTTGGTATAAAGGGAGATGGTAGGGGGAACCCTGAAGGGGCATTTTTACCAACCATTGCAGAAAAAGTAATAGAGTTAAGTAGCCAAATAGATCCCGATGTAAAGAGTAGAGCACCTCGCATTCTTGAGGAGTTGAAAAGGGAGGAGTTGCGTTTTGTACAGACACTAGAGAGAGGAGAAAAGTTGCTTGATGAAATGCTGGCTAATGCATTATTAAATTCTAATGAAAATGGAAACGGGCCTATTTTGTCAGGAAAAGATGTATTTCTTTTGTATGACACTTATGGGTTTCCAGTGGAGATAACAACAGAAGCTGCTGAAGAACGTGGGGTTGGTATAGATATGAATGGTTTTGAAATTGAAATGGAGAACCAAAGGCGGCAATCTCAGGCTGCGCATAATGCTGTTAAACTGGCAGTTGGAAATAGTGCAGATCTTACTGAAAATATTTCTGACACTGAATTTCTAGGATATGAAACCCTCTCTACCAAAGCAGTAATTGAAGGCCTCTTGGTGAATGGGAACCCAGTGATCCAAGTTTCCGAAGGAAGTGATGTAGAAATTTTTCTGAATAGGACACCATTTTATGCTGAATCAGGTGGTCAAATTGGAGATCACGGTTTCTTATATGTAAATGAAGATAGAAACCAAAAAAATGCTGTTGTTGAGATAAAAGATGTCCAGAAATCTCTGGGTAACATATTTGTTCATAAGGGCACTATCAAGGAAGGAGTTGTAGAGGTTGGCAAAGAAGTAGAAGCTGCAGTAGATGCAAACCTGAGGCAACGGGCTAAGATTCATCATACAGCTACTCATTTGCTACAAGCTGCACTTAAAAAAGTTATAGGTGATGAAACATCACAAGCTGGTTCACTGGTGGCTTTCGATCGTCTCAGGTTTGACTTTAACTTCCACCGACCACTTCAGGAGAAGGAGCTTGTGGAAATTGAAGAATTGATCAATGGATGGATTGGGGATGCAACACTGCTCCAGACTAAAGTGATGCCTCTAGCTGATGCAAAAAGAGCTGGAGCTATTGCAATGTTTGGAGAAAAATATGGTGAACAGGTACGTGTTGTAGAGGTTCCAGGTGTATCCATGGAGCTATGTGGTGGGACCCATGTCAGCAATACTTGTGAAATACGTGGCTTCAAAATAATCTCAGAACAGGGTATTGCATCTGGGATCAGGCGTATTGAAGCTGTTGCTGGGGATGCTTTCATCGAATATGTCAATGCTAGAGATAATCACATGAGACAACTATGCTCCACTCTGAAAGTGAAAGCTGAAGAAGTGACTACTAGGGTAGAAGCTCTCTTGGAGGAGTTACGGATGACAAGAAATGAAGTTTCTGCTGTTCGTGCAAAAGCAGCAGTATACAAAGCATCAGTTATGGCAGGCAATGCATTCCCAGTGGGGACTTCAAAAAAAATCAGGGTACTAGTTGAGAGTATGGATGATATTGATGCGGATTCACTAAAGAGTGCAGCTGAATACCTCATTGATACGCTACAAGATCCTGCAGCTGTCATTTTGGGCTCATGTCCTAGTGAAGAGAAGGTAAGTTTGGTTGCAGCATTCACCCCAGGGGTTGTTGATCTAGGAATTCAAGCAGGGAAGTTTATAGGGCCCATAGCTAAGTTGTGTGGTGGAGGAGGAGGTGGCAGACCTAATTTTGCTCAGGCAGGTGGAAGGAAGCCTGAGAATTTGTCAGGTGCTCTAGAAAAAGCTCGAGAAGAGCTTGTTGCCATTCTATCTGAAAAAGCAAGCTGA 3021 42.93 MEGLKLGHTLQNSHGLNLLVQIPNSSLVSRPSFPIQPKCNLALSTGCRVYAGSIIRKLALISPSGLPCGHSNLKQTREVRFTTRSTSASIQPMTEELVEDKSKDLPTSGDSIRHRFLDFYASRGHKVLPSSSLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQRCIRTNDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRLWISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHPERGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYVARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELKREELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAAEERGVGIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSADLTENISDTEFLGYETLSTKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAESGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDANLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEELINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVTTRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSLKSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGVVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSGALEKAREELVAILSEKAS* 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2491564 2500092 - Vvi3g254 Vvi3g254 783929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g254 1006 Gene3D - 744 797 - -
Vvi3g254 1006 Gene3D - 820 881 - -
Vvi3g254 1006 CDD AlaRS_core 110 339 - -
Vvi3g254 1006 PANTHER ALANYL-TRNA SYNTHETASE 108 997 - -
Vvi3g254 1006 Gene3D - 683 818 - -
Vvi3g254 1006 Gene3D - 559 672 - -
Vvi3g254 1006 PRINTS Alanyl-tRNA synthetase signature 175 186 IPR002318 GO:0000166|GO:0005737
Vvi3g254 1006 PRINTS Alanyl-tRNA synthetase signature 297 308 IPR002318 GO:0000166|GO:0005737
Vvi3g254 1006 PRINTS Alanyl-tRNA synthetase signature 324 337 IPR002318 GO:0000166|GO:0005737
Vvi3g254 1006 PRINTS Alanyl-tRNA synthetase signature 375 391 IPR002318 GO:0000166|GO:0005737
Vvi3g254 1006 PRINTS Alanyl-tRNA synthetase signature 399 412 IPR002318 GO:0000166|GO:0005737
Vvi3g254 1006 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 773 816 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi3g254 1006 SUPERFAMILY Translation proteins 568 672 IPR009000 -
Vvi3g254 1006 SUPERFAMILY Class II aaRS and biotin synthetases 109 343 IPR045864 -
Vvi3g254 1006 SUPERFAMILY ThrRS/AlaRS common domain 672 830 IPR018163 GO:0000166
Vvi3g254 1006 Hamap Alanine--tRNA ligase [alaS]. 108 1001 IPR023033 GO:0004813
Vvi3g254 1006 Pfam DHHA1 domain 852 996 IPR003156 GO:0003676
Vvi3g254 1006 Pfam tRNA synthetases class II (A) 112 674 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi3g254 1006 Coils Coil 838 872 - -
Vvi3g254 1006 Hamap Probable alanine--tRNA ligase, chloroplastic. 99 1003 IPR027522 GO:0009507
Vvi3g254 1006 Gene3D - 890 997 - -
Vvi3g254 1006 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 108 997 - -
Vvi3g254 1006 TIGRFAM alaS: alanine--tRNA ligase 112 980 IPR002318 GO:0000166|GO:0005737
Vvi3g254 1006 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 107 829 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vvi3g254 1006 Gene3D Bira Bifunctional Protein; Domain 2 107 340 IPR045864 -
Vvi3g254 1006 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 344 575 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vvi3g254 1006 Coils Coil 990 1006 - -
Vvi3g254 1006 SMART tRNA_SAD_4 773 816 IPR012947 GO:0004812|GO:0005524|GO:0043039
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g254 K01872 AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7] - vvi:100255425 1950.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g254 . . . . . . . Bma12g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0645 . . . . . . . . Bhi10g01224 Tan05g1079 Cmetu11g1332 . Hepe08g0326 . . . . . . . . . . . . Cme11g01236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006559 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 3 1 38