Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g26 ATGGAGGCTATCAGAAAGCAAGCCTCCAAGTTCAGAGAACAGGTCGCCAAGCAACAACAGGCTGTCCTCAAACAGTTTGGTGGTGGGGGATACGGGGGTTCAGATAATGTAATTACTGATGAGGCAGAGCTTCAGCAGCATCAGAAACTTGAAAAGCTTTACATATCAACACGTGCTGGAAAGCATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGGAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTACCAGTGGTAATACGTTATCGAAAGCTGCATTGAATTATGGACGAGCTCGTGCCCAAATTGAGAAAGAACGTGGAAATCTATTGAAAGCTCTTGGTACACAGGTTGCAGAGCCATTAAGAGCGATGGTAATGGGAGCTCCATTGGAGGATGCTCGACATCTTGCTCAACGCTATGAAAGAATGCGACAAGAAGCTGAAGCTCAGGCCATCGAAGTTTCCAAACGCCAAGCAAAAATGAGGGAAGCAACAGGCAATGCTGATAATACTTTGAAACTGGAAGCTGCAGAAGCAAAGTTGCATGACCTGAAATCAAACATGGCAATATTGGGGAAGGAAGCTGCTGCTGCAATGGCTGCTGTTGAAGCTCAACAACAGAGGCTGACACTCCAGCGACTTATTGCCACAGTTGAATCCGAACGCGCTTATCACCAAAGAGTCCTTCAAATACTTGAGCTACTTGAAACTGAGATGATTTCAGAGCGACAACGAATTGAAGCACCTCCTAGCCCTCCTGTGGAAAACAATACGCCCCCACCTCCATCGTATGAAGAAGTTAACGGAGTATTTGCTTCTCAAACACACAACGGATCCAGTGACAGCATTAGTTACTTCTTAGGAGAGGTTATGCATTCGTATCAAGCTGAATCTGATGTGGAGTTGAATTTGTCAATTGGTGACTTTGTTGTTGTCCGAAAGGTGTCTAATAATGGATGGGCTGAAGGTGAATGCAAAGGAAAGGCAGGTTGGTTCCCATTTGGATATGTTGAAAAGCGGGAACGGGTTCTTGCAAGCAAGATGGCTGAAGTGTTCTAA 1116 44.27 MEAIRKQASKFREQVAKQQQAVLKQFGGGGYGGSDNVITDEAELQQHQKLEKLYISTRAGKHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDCRKYGVENTCTSGNTLSKAALNYGRARAQIEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYERMRQEAEAQAIEVSKRQAKMREATGNADNTLKLEAAEAKLHDLKSNMAILGKEAAAAMAAVEAQQQRLTLQRLIATVESERAYHQRVLQILELLETEMISERQRIEAPPSPPVENNTPPPPSYEEVNGVFASQTHNGSSDSISYFLGEVMHSYQAESDVELNLSIGDFVVVRKVSNNGWAEGECKGKAGWFPFGYVEKRERVLASKMAEVF* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 430288 436670 - Vvi3g26 Vvi3g26 783701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g26 371 Coils Coil 149 176 - -
Vvi3g26 371 Coils Coil 1 21 - -
Vvi3g26 371 MobiDBLite consensus disorder prediction 263 285 - -
Vvi3g26 371 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Vvi3g26 371 Coils Coil 186 213 - -
Vvi3g26 371 SMART SH3_2 305 360 IPR001452 GO:0005515
Vvi3g26 371 Coils Coil 220 240 - -
Vvi3g26 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Vvi3g26 371 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 2 1 371 - -
Vvi3g26 371 PANTHER SH3 DOMAIN-CONTAINING 1 371 - -
Vvi3g26 371 SUPERFAMILY SH3-domain 261 359 IPR036028 GO:0005515
Vvi3g26 371 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Vvi3g26 371 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Vvi3g26 371 Gene3D SH3 Domains 292 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g26 - - - vvi:100260580 698.353
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g26 Vvi18g1042 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37