Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g269 ATGGCTCAGAATGGTGGCATCATATTGCTTCTCTGTGCCACCTTCTCAGTTTTGGCCATGGTTGGTGCTGAAGACCCTTACAGGTTTTTCGAGTGGAATGTCACGTATGGGGACATTTACCCACTTGGGGTTCGCCAACAGGGAATTCTTATCAATGGACAGTTTCCAGGGCCTGACATCTACTCTGTTACAAATGACAACCTCATTATCAATGTCCATAACAGCTTGCCAGAACCTTTCCTCATCTCCTGGAATGGGGTTCAGCAGAGGCGAAATTCGTTTGAAGATGGGGTGTATGGGACTACATGTCCTATCCCACCTGGGAAGAACTTCACTTACATCCTACAAGTAAAAGATCAGATTGGGAGCTTCTTCTACTTCCCATCTCTAGCCTTCCACAAGGCAGCTGGAGGCTTTGGAGGGATCAGGATTCTCAGCAGACCAAGAATCCCAGTTCCATTCCCTGACCCTGCTGGGGACTATACCATTCTCATTGGAGATTGGTACACGCACAATCATAATACCTTGAAGGCCATTCTGGACCGTGGGAGGAGGCTGCCTTTCCCTGATGGCATTCTGATCAATGGTCGCGGAGCCAATGCTGCAAGTTTTACTGTCGAACGAGGCAAAACTTACAGGCTTAGGATATCAAATGTAGGACTCCAGAATTCACTCAATTTTCGGATTCAGGGACACAAGATGACACTGGTTGAAGTTGAGGGAACCCACACTCTCCAGACCTCCTACTCGTCGCTGGACGTTCATGTTGGCCAGTCCTACTCTGTACTGGTTACTGCAGACCAGGCTGCTAAGGACTACTACATTGCAGTTTCCTCCCGGTTCACTGAAAAGGTCCTGACCAGCAGTGCCGTCCTTCACTACAGCAACTCTGTCTCTCCAGTGAGCGGTCCACTCCCTGGTGGACCTACCACCCAGATTGATTATTCTCTTAACCAGGCTCGGTCCATCAGGACTAATCTCACAGCAAGTGGACCGAGACCAAACCCTCAAGGATCTTACCACTATGGTCTCATCAACATCACAAGAACTATCAAGCTAGGGAACACAGCAGGACAAGTTAATGGCAAGCAGCGATATGCAGTTAACAGTGTGTCATTTATCCCTGCTGACACCCCCCTTAAGCTTGCGGACTACTTCAAGATTGGAGGTGTTTTTCGTATAGGAAGCATCCCAGATCAACCAAGTGGCAAGAAAATGTACCTTGACACGTCAGTCATGGGAGCTGACTTCAGAGCATTTGTGGAGATAGTGTTTGAGAACCGCGAGAGTATCATCCAGAGCTGGCATCTTGATGGATACTCCTTCTGGGTAGTTGGAATGAATGGAGGAGTGTGGACACCTGCAAGCAGGAACCAGTACAATCTTAGAGATGCAGTATCGCGTTGCACCACTCAGGTATATCCCAAGTCATGGACTGCTGTGTACATAGCACTAGACAATGTGGGAATGTGGAATCTGAGAACAGAGTTCTGGGCAAGGCAATACCTTGGACAACAATTCTATCTTAGAGTTTACTCCCCAGTGGGGTCGATCAGGGACGAATACCCGATTCCAAAGAATGCACTTCTCTGTGGTAGAGCTGCAGGAAGAAAAACAAGATCCCTCTAA 1629 48.19 MAQNGGIILLLCATFSVLAMVGAEDPYRFFEWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFFYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTILIGDWYTHNHNTLKAILDRGRRLPFPDGILINGRGANAASFTVERGKTYRLRISNVGLQNSLNFRIQGHKMTLVEVEGTHTLQTSYSSLDVHVGQSYSVLVTADQAAKDYYIAVSSRFTEKVLTSSAVLHYSNSVSPVSGPLPGGPTTQIDYSLNQARSIRTNLTASGPRPNPQGSYHYGLINITRTIKLGNTAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRIGSIPDQPSGKKMYLDTSVMGADFRAFVEIVFENRESIIQSWHLDGYSFWVVGMNGGVWTPASRNQYNLRDAVSRCTTQVYPKSWTAVYIALDNVGMWNLRTEFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGRAAGRKTRSL* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2581956 2585281 + Vvi3g269 Vvi3g269 783944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g269 542 SUPERFAMILY Cupredoxins 23 174 IPR008972 -
Vvi3g269 542 Gene3D - 343 539 IPR008972 -
Vvi3g269 542 Gene3D - 27 148 IPR008972 -
Vvi3g269 542 Pfam Multicopper oxidase 379 513 IPR011706 GO:0005507|GO:0016491
Vvi3g269 542 PANTHER MULTI-COPPER OXIDASE TYPE I FAMILY PROTEIN-RELATED 13 535 - -
Vvi3g269 542 SUPERFAMILY Cupredoxins 344 533 IPR008972 -
Vvi3g269 542 PANTHER MULTI-COPPER OXIDASE 13 535 IPR045087 -
Vvi3g269 542 Gene3D - 158 332 IPR008972 -
Vvi3g269 542 SUPERFAMILY Cupredoxins 154 334 IPR008972 -
Vvi3g269 542 CDD CuRO_1_AAO_like_1 29 144 IPR034273 GO:0005507
Vvi3g269 542 CDD CuRO_3_AAO_like_1 375 496 IPR034275 GO:0005507
Vvi3g269 542 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Vvi3g269 542 Pfam Multicopper oxidase 160 296 IPR001117 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g269 - - - vvi:100265895 1101.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1013 . . . . Blo04g00593 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333