Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g27 ATGGCGCACCAATCCACCATTAGCGTCACTGCGCTCACTGCTCCTAAAGCAGCTCCTCCACTGTTCTCTCTGGTCCCCCATCTCTCCCCCCCCCCCTCTCTCTCTCTCATGTCATCATTCATCAAGTATAAGTCACTCTGTTTTCTTCATTTTTCATTCTCCAGAGTCCCATGGCTTTTCCATGTTTACATTGTGTATATGGGAGAAAGACCCCATGATGAACCAGAACTCATTGAAGACTCTCACCACCAAATTCTCTCAAATCTCCTTGGAAGCGAAGAAGCTGCCAAGGAATCGATTTTATACCACTACAAACACGGGTTCTCAGGGTTTGCTGCAGTTTTAACAGAGTCTCAAGCCAAGGTTATTGCAGACTTCCCTGGAGTTGTCCGCGTGGTTCCCAACAGAATTCTCAGCCTACAAACAACTAGAAGCTGGGATTTTCTCCATGTAAACCCTCATTCTGGGACTGGAATCCTTTCAAAGAGTCTTTCGGGTTTTGGGTCCATCATTGGCATCATAGATACAGGGATATGGCCTGAGTCTGACAGCTTTAAAGATAAGGGCATGGGTAAAATCCCCTCTCGCTGGCATGGGACATGTCAAGAAGGAGAACAATTTAACCGCTCCAACTGCAACAGGAAAATAATCGGTGCGCGTTGGTATATCAAAGGATATGAGGCTGATTTTGGAAAGCTGGATACAAGTGGGGGTGTTGAATTCTTGTCTCCTAGGGATGCAGTAGGCCATGGTACTCACACTGCTTCAATCGCTGCGGGTTCTCTAGTAAAAAATGCAAACTTTAGGGGACTAGCTCGAGGATTGGCAAGAGGGGGGGCTCCATCAGCTCAGTTAGCTGTCTACAAAGTCTGCTGGTCTACTGGTGGATGCAGCTCAGCGGATGTTCTTGCTGCATTTGATGATGCTGTTCTTGATGGGGTGGATGTTCTCTCAGTGTCCCTGGGCTCATCCCCGCCACTTACTGCTTATTTTGATGATTCTTTGGCCATTGGTTCCTTCCATGCTGTAGCTAAAGGGATTTCTGTTGTATGCTCTGCTGGTAACTCTGGCCCTTACCCTCAAACCGTCATCAATACGGCTCCATGGATCATATCAGTTGCAGCCAGCACCATTGATAGAGCTTTCCGAACTGTGATTACCTTGGGGAACAACCAAACTCTTGTGGGACAGGCTTTGTATACAGGGAAGAATGTGAATAAGTTCTACTCTTTTGTGTATGGAGAAAGCATTGTCTCACAAGATTCAGATGAAGAAAGCGCAAGAGGTTGTGACATAGGAAGCTTGAATGCTACTTTAGCAAGAGGAAATGTTGTTCTCTGTTTCCAAACTCGGTCTCAGAGGTTCTCTGCCACTGCAATAAGAACTGTACAAACAGTTGGGGGTGTTGGACTCATTTTTGCCAAGTCTCCCAGTAAGGATGTTACACAATCTATGGGAATCCCCTGTGTCGAGGTGGACTTGGTTACAGGGACATCTCTGCTGACGTACATGGTGTCGACCAGCAAGCCTATGGTCAAGTTTAGTCCCACAAAGACAAAGGTGGGACTACAGAGTTCCCCAGAGGTGGCTTACTTCTCTTCCAGAGGACCCAGTTCTCTTTCTCCCTCTGTGTTGAAGCCTGATATTGCTGCTCCTGGGGTGAGTATATTGGCTGCCTGGTCTCCTGCTGCTTCTTCCCCCACAATTGATATGACTCAAAAAGAATTACCTCCTGAGAACTTCATGATTGAGTCAGGAACCTCCATGGCTTGTCCCCATGTTTCCGGCATTGTGGCTCTTCTCAATTCCATGTACCCCACCTGGAGTCCTGCTGCAATCAAGTCTGCTCTTATCACAACAGCCTCTGTGAAGGATGAGTATGGTCTAAATGTAGTGGCTGAGGGAGCTCCATACAAGCAAGCCGACCCGTTTGATTATGGAGGTGGTCATGTAGATCCTAACAAGGCCATGGACCCTGGTCTCATATATGACATGGGAATGAAAGACTATGTCCATTTTCTGTGTTCCATGGGCTACAACACCACTGCTATCCACTTAATCACCAAGTCCCCATGCCCCAAAAACCGAAACCGAAACCTCCTCCTGAACCTTAATCTTCCTTCCATCATCATTCCCAATCTGAAGAAGAGCTTAGCAGTATCAAGAACAGTGACAAATGTTGGTCCAGAAGAGTCTGTGTACATAGCCCAGGTTGAAGCTCCTCCAGGCACAAATGTTAGAGTGGAGCCATGGATTTTATCATTCAATTCCACCACAAAGAAGCTAAAGTTCAAGGTATTCTTTTGTTCCCGGCAAAGACTACTAGGAAGATATTCATTTGGGCATCTGTTGTGGGGAGACGGCTTCCATGCAGTGAGAATACCATTGATCATCGGAACCGTAACTGCAGATTTGTAA 2418 46.73 MAHQSTISVTALTAPKAAPPLFSLVPHLSPPPSLSLMSSFIKYKSLCFLHFSFSRVPWLFHVYIVYMGERPHDEPELIEDSHHQILSNLLGSEEAAKESILYHYKHGFSGFAAVLTESQAKVIADFPGVVRVVPNRILSLQTTRSWDFLHVNPHSGTGILSKSLSGFGSIIGIIDTGIWPESDSFKDKGMGKIPSRWHGTCQEGEQFNRSNCNRKIIGARWYIKGYEADFGKLDTSGGVEFLSPRDAVGHGTHTASIAAGSLVKNANFRGLARGLARGGAPSAQLAVYKVCWSTGGCSSADVLAAFDDAVLDGVDVLSVSLGSSPPLTAYFDDSLAIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWIISVAASTIDRAFRTVITLGNNQTLVGQALYTGKNVNKFYSFVYGESIVSQDSDEESARGCDIGSLNATLARGNVVLCFQTRSQRFSATAIRTVQTVGGVGLIFAKSPSKDVTQSMGIPCVEVDLVTGTSLLTYMVSTSKPMVKFSPTKTKVGLQSSPEVAYFSSRGPSSLSPSVLKPDIAAPGVSILAAWSPAASSPTIDMTQKELPPENFMIESGTSMACPHVSGIVALLNSMYPTWSPAAIKSALITTASVKDEYGLNVVAEGAPYKQADPFDYGGGHVDPNKAMDPGLIYDMGMKDYVHFLCSMGYNTTAIHLITKSPCPKNRNRNLLLNLNLPSIIIPNLKKSLAVSRTVTNVGPEESVYIAQVEAPPGTNVRVEPWILSFNSTTKKLKFKVFFCSRQRLLGRYSFGHLLWGDGFHAVRIPLIIGTVTADL* 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 440844 445043 + Vvi3g27 Vvi3g27 783702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g27 805 Gene3D - 674 801 - -
Vvi3g27 805 CDD PA_subtilisin_like 385 513 - -
Vvi3g27 805 Pfam Subtilase family 168 622 IPR000209 GO:0006508|GO:0008236
Vvi3g27 805 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 60 141 IPR037045 -
Vvi3g27 805 ProSiteProfiles Serine proteases, subtilase domain profile. 145 657 - -
Vvi3g27 805 Pfam Peptidase inhibitor I9 62 140 IPR010259 -
Vvi3g27 805 SUPERFAMILY Subtilisin-like 52 713 IPR036852 GO:0004252|GO:0006508
Vvi3g27 805 Pfam Fibronectin type-III domain 703 798 IPR041469 -
Vvi3g27 805 CDD Peptidases_S8_3 140 622 IPR034197 -
Vvi3g27 805 Gene3D - 379 521 - -
Vvi3g27 805 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 72 798 IPR045051 -
Vvi3g27 805 PRINTS Subtilisin serine protease family (S8) signature 166 185 IPR015500 -
Vvi3g27 805 PRINTS Subtilisin serine protease family (S8) signature 246 259 IPR015500 -
Vvi3g27 805 PRINTS Subtilisin serine protease family (S8) signature 585 601 IPR015500 -
Vvi3g27 805 PANTHER OS09G0530800 PROTEIN 72 798 - -
Vvi3g27 805 Gene3D Peptidase S8/S53 domain 169 670 IPR036852 GO:0004252|GO:0006508
Vvi3g27 805 ProSitePatterns Serine proteases, subtilase family, serine active site. 586 596 IPR023828 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g27 - - - vvi:100260528 1387.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g27 . . . Bda08g00958 . . Bma05g00427 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1212 . . . . . . . . . . Bpe05g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001239 3 1 3 3 2 1 1 1 1 1 1 1 2 1 1 4 1 1 2 1 1 2 2 5 9 1 5 5 5 6 73