Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g278 ATGGAGGGAGAGACGGGAGAGAAGGGGAGTGTTTGTGGTTCTTCAGAGGGAGATGTGATTGGGGAGATGATGGAAGTGATCGAGAATGTGGGATCGTACGTGGGGTTCAGGAGAACTCAGAGGAAGGAGAGTTTGAATCTTGTGAGGAGGTTGAAACTGCTGGTGCCTCTTCTGGAGGAGTTGAGGGAGCTTGGGACTGCAGCAGTTTCAGGGGAGGCTTTGGGGTGTTTGGCTAGACTGAAAAAGGCACTTGTTTCTGCTAAGAAATTGTTGAAGAACTGTAACTACGGAAGCAAGATTTACCTGGCACATGAGAGTGAGGCAGTGGCGGTTAGATTTCATGCTGTCTACGACAAATTGAATCAGGCATTGGATGATCTACCCTACAATGATCTGGGAATCTCTGATGAAGTGAAGGAGCAAGTTGAACTAATGCGAATGCAACTCAAGAGAGCAAAAAGACGAACAGAAACACAAGATATAGAGTTAGCAATGGACCTGATGGTTGTATTCTCGAAGACGGATGACAGAAATGCAGACACTGCGATATTAGAAAGACTTGCGAGCAAGTTGGAATTGCGTACAGTTGCAGACTTGAAGGTAGAAACAGTAGCTGTTAGGAAACTTGTAAAAGAAAGAGCTGGGTTGAGTGCAGAGGCCAGTCAGCAAATAGTAGAGCTTTTGGGAAAGTTCAAAAAACTGGCTGGGATGGAGGAATCCAGTGTGCTTGATGGTCCAGTTTTGTCGAGAAATCTACAGAAGTGCCCGTCTTTGGTGATTCCTCACGAGTTCCTCTGTCCAATCTCGCTGGAGATCATGACAGATCCTGTTATTGTTGCAACTGGACAGACTTATGAACGGGAAAGCATACAGAAGTGGCTGGATTCAGATCATCATACCTGCCCAAAGACAGGACAAACTTTAGTCCACTTGTCGCTGGCACCAAACTATGCCCTTCGCAACCTAATTCTGCAATGGTGCGAGAAGAACCAGTTTGAGTTGCCCAGAAAGGATATTAAAGCAGGCTCTAATGGCTCCTCCATTCAAGTCAAACAGAAAATCTCTTCTTTGGTCCAAAACCTATCATCATCTCAACCAGATGTGCAGAGAAAGGCCATTATGAAGATTCGGATGCTAGCTAAAGAGAACCCAGATAACAGAATTCGTATTGCCAACAGAGGAGGAATCCCTCCTCTGGTTCAACTCCTGTCCTATCCAGATTCCAAGCTTCAAGAACACACTGTAACAGCCCTTTTGAACTTGTCAATTGATGAGGCAAACAAAAGACTCATAGCTAGAGAAGGAGCCATTCCAGCTATAATTGAAATTCTGCAGAATGGAACAGACGAGGCCAGAGAAAACTCTGCTGCAGCCCTCTTCAGCTTGTCAATGCTCGACGAGAACAAAGTAATGATTGGGTCTTTAAATGGGATCCCTCCCTTGGTAAACCTCCTGCAGAATGGAACAACCAGAGGGAAGAAGGATGCAGCCACTGCCTTGTTTAACCTGTCACTCAACCAATCCAATAAGTCGCGAGCCATCAAGGCAGGTATCATACCAGCATTACTTCATCTGCTTGAGGATAAAAACCTGGGAATGATCGATGAAGCTCTCTCAATTTTACTGCTTTTAGTATCACATCCTGAAGGGCAGACTGAAATTGGAAGGCTATCGTTCATTGTAACTCTGGTTGAAATCATGAAAGATGGGACCCCAAAGAACAAGGAGTGTGCCACATCAGTCCTCCTTGAGCTGGGTTTGAACAATTCATCTTTCATTTTGGCTGCACTGCAGTATGGTGTGTATGACCATCTGGTAGAGATTATGAGATGCGGAACCAACAGAGCCCAGAGAAAAGCAAATTGTCTTCTGCAACATATGTGCAAATGTGAACACATCCCATGGAACTTCAATTATCGCAATACTATAGTATCTACAGTCATTTTTCTACAAGTTCTACAATCAAAGTTTCATGTGCACATTGCGTATTTGCCACCAGGCCTTACATATAATACAATACTCAGCACAGAGTGA 2034 44.54 MEGETGEKGSVCGSSEGDVIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPLLEELRELGTAAVSGEALGCLARLKKALVSAKKLLKNCNYGSKIYLAHESEAVAVRFHAVYDKLNQALDDLPYNDLGISDEVKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDRNADTAILERLASKLELRTVADLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGMEESSVLDGPVLSRNLQKCPSLVIPHEFLCPISLEIMTDPVIVATGQTYERESIQKWLDSDHHTCPKTGQTLVHLSLAPNYALRNLILQWCEKNQFELPRKDIKAGSNGSSIQVKQKISSLVQNLSSSQPDVQRKAIMKIRMLAKENPDNRIRIANRGGIPPLVQLLSYPDSKLQEHTVTALLNLSIDEANKRLIAREGAIPAIIEILQNGTDEARENSAAALFSLSMLDENKVMIGSLNGIPPLVNLLQNGTTRGKKDAATALFNLSLNQSNKSRAIKAGIIPALLHLLEDKNLGMIDEALSILLLLVSHPEGQTEIGRLSFIVTLVEIMKDGTPKNKECATSVLLELGLNNSSFILAALQYGVYDHLVEIMRCGTNRAQRKANCLLQHMCKCEHIPWNFNYRNTIVSTVIFLQVLQSKFHVHIAYLPPGLTYNTILSTE* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2620299 2622993 - Vvi3g278 Vvi3g278 783953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g278 677 PANTHER U BOX DOMAIN-CONTAINING 16 631 - -
Vvi3g278 677 SUPERFAMILY RING/U-box 260 334 - -
Vvi3g278 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 476 518 IPR000225 GO:0005515
Vvi3g278 677 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Vvi3g278 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Vvi3g278 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Vvi3g278 677 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 631 - -
Vvi3g278 677 Gene3D - 340 656 IPR011989 -
Vvi3g278 677 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Vvi3g278 677 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Vvi3g278 677 Pfam Armadillo/beta-catenin-like repeat 507 541 IPR000225 GO:0005515
Vvi3g278 677 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Vvi3g278 677 SMART arm_5 506 546 IPR000225 GO:0005515
Vvi3g278 677 SMART arm_5 383 423 IPR000225 GO:0005515
Vvi3g278 677 SMART arm_5 424 464 IPR000225 GO:0005515
Vvi3g278 677 SMART arm_5 465 505 IPR000225 GO:0005515
Vvi3g278 677 SUPERFAMILY ARM repeat 354 631 IPR016024 -
Vvi3g278 677 Pfam U-box domain 260 331 IPR003613 GO:0004842|GO:0016567
Vvi3g278 677 CDD RING-Ubox_PUB 264 306 IPR045210 -
Vvi3g278 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 334 IPR013083 -
Vvi3g278 677 Coils Coil 135 159 - -
Vvi3g278 677 Gene3D - 16 130 IPR036537 GO:0007166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g278 - - vvi:100250244 1211.05