Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g279 ATGAAGTTAACAGGGTTTCTCGATATCAACCCATTGGGCTCCTCAACGCCTACATGGGCGAGCCTAGTTGCTGGTGTCTTTGTGCTTATCTCTCTTTCCCTCTCAATGTACCTTCTATTTGAGCACCTTTCTTCATACAAGAATCCCGAGGAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATTGAATCGTTTGTGTCATTGGTGAATCCATCAATCAGTGTTGATTGTGCAATACTACGTGACTGCTATGAAGCCTTTGCCATGTATTGCTTCGGGAGATACCTTGTTGCTTGCTTGGGTGGGGAAGAGAGGACTATTGAATTTATGGAGAGGCAAGGACGAGCAAGTTCTAAAACTCCCTTATTAGAGAACAATTGTGAAAAGGGAACAGTAAAGCATCCTTTCCCAATGAATTATTTCCTAAAACCATGGAAACTTGGTCAATGGTTTTACCAAGTCATCAAGATTGGCATTGTTCAATATATGATAATAAAGTCTTTGAGTGCTATTTTAGCTGTAATTCTTGAAGCCTTCAGCTTGTATTGTGAAGGCGACTTTAAATGGGGATGTGGGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATAAAACCATTGGCTAAGTTTCTAACATTTAAATCAATTGTGTTTTTAACATGGTGGCAAGGTGTGGCGATTGCTCTTCTTTATGACCTTGGTTTATTTAAGAGTGCTATTGCTCAAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTATCTGGAAGTGTTTCGGTTCTTGGAGACTATGCATCTACCGATCCTCTGGATCCTGATGAGGTTAGGGACAGTGAGCGGCCAACAAAACTACGCCTTCCCCACCCTGACATTGACATCAGGAGTGGAATGACTATCGGAGAAAGTGTTCGGGATGTTTTCATTGGTGGTGGTGGATATATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACATAAAGAGGCATGACAAGGAAAAGAGAAAAACAAAGGATGACAGTTGCATAACACCCACACGAAGAGTGATCCGTGGAATAGATGATCCCCTATTAAATGGGAGCTTTAGTGATAGTGGGGTCTCAAGGGGAAAGAAGCATCGTCGAAAATCAGGATATACCAGTGGAGAAAGTGGGGGAGAAAGCAGCAGTGATCAAAGTTATAGTGCATATCAGATCCGCGGTGGCAGATGGGTTACCAAAGATTAG 1449 41.82 MKLTGFLDINPLGSSTPTWASLVAGVFVLISLSLSMYLLFEHLSSYKNPEEQKFLIGVILMVPCYAIESFVSLVNPSISVDCAILRDCYEAFAMYCFGRYLVACLGGEERTIEFMERQGRASSKTPLLENNCEKGTVKHPFPMNYFLKPWKLGQWFYQVIKIGIVQYMIIKSLSAILAVILEAFSLYCEGDFKWGCGYPYIAVVLNFSQSWALYCLVQFYTVTKDELEHIKPLAKFLTFKSIVFLTWWQGVAIALLYDLGLFKSAIAQGLQSKSSVQDFIICIEMGIASIVHLYVFPAKPYELMGDRLSGSVSVLGDYASTDPLDPDEVRDSERPTKLRLPHPDIDIRSGMTIGESVRDVFIGGGGYIVNDVKFTVNQAVEPVEKGITKFNQKLHKISQNIKRHDKEKRKTKDDSCITPTRRVIRGIDDPLLNGSFSDSGVSRGKKHRRKSGYTSGESGGESSSDQSYSAYQIRGGRWVTKD* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2630924 2639037 + Vvi3g279 Vvi3g279 783954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g279 482 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 12 476 IPR005178 -
Vvi3g279 482 MobiDBLite consensus disorder prediction 455 473 - -
Vvi3g279 482 MobiDBLite consensus disorder prediction 435 482 - -
Vvi3g279 482 PANTHER PROTEIN LAZ1 12 476 IPR031171 GO:0009626
Vvi3g279 482 Pfam Organic solute transporter Ostalpha 21 301 IPR005178 -
Vvi3g279 482 Coils Coil 387 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g279 - - - vvi:100245301 950.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g279 . . . . . Bpe12g00146 . . Cmo19g00812 Cmo11g01781 . . . . . . Cpe15g00635 Bhi05g01598 . . . . . . Cla02g00356 Cam02g0364 Cec02g0365 Cco02g0372 Clacu02g0356 Cmu02g0353 Cre02g0683 . . . . . Csa07g00177 . Cme01g01155 . Blo13g00478 . . . . . Bma08g00721 . . . Cma11g01338 . Car11g01409 Car19g00608 . . . . . . . . . . . . . . . . Lsi11g01278 . Chy01g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007981 0 8 1 1 1 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 0 1 1 1 35