Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g28 ATGAGATGGCGATGTGGGATTGGACCCAACAAAGGTAGGCTGGAGTACTTTCACTGGAGAGAGATTAAAGATAAACCATTAACTCAGAGCAAACCCCTCATCATTTTCCAGTGCTGCTGCCTCTGGAATCTCTCCCGACTTCCTCTCTTCAACCTCTGTTCATCTTTGTCAGGAATGGATCAGTGTATTGAATCAAGAGCGTTGAAAGAAAGTTTACGCAGAGAAGCGGCCATGAAGACGACCCCGCAGGTGTTGTATGATGATGTATTGTGTGGTGCCGGAGTTAATGGCGTTTCAGGCGAGGACTTCTCCGTTGACGACCTTTTTGACTTTTCTAATGGGGGGTTAGGAGTTGGAGTTGACGATGATAACTCAAATTCCAGCAGTTTCTCCGGCACCGGAGATTTTGAGTCCCTTTCGGCGGGAGGACTAGCCGTTCCTGCTGACGATTTGGAGCACCTTGAATGGTTATCTCACTTTGTAGACGATTCTTCAGCGTCGGAGCTCTCTCTTCTATGCCCCGCCGTTACCGGAAACTCTCCGTCAAAGCGGTGCGAAGAAGAGCCTAGGCCGGCGTTGTTGAGAACTCCGCTATTTCCGACGCCGCTTCCGGCAAAGCCCAGAAGCAAACGGCACAGAAGCAGCGGTCGTGCCTGGGCTTTTGGGTCTCATTCACCATCTTCGTCTCCTTCCTCTTCGTCGTCCTCGTCTTCAACGTCTTGCTTGATATTCGCCAACACCGTTCACAACATGGAGTCGTTTTACAGTCTCGAAAAGCCGCCGGCGAAGAAGCCCAAAAAGTCACCGTCGGCGGACTCTCAGCCGCAGCGGCGCTGCAGCCATTGCCTGGTTCAGAAGACCCCACAGTGGCGAACCGGGCCACTCGGCCCAAAAACCCTCTGCAACGCTTGTGGGGTTCGTTTCAAATCCGGCCGGCTCTTCCCGGAGTACAGACCAGCCTGCAGTCCAACTTTCTCCGTCGAAATCCACTCCAACAGCCACCGGAAAGTCCTAGAAATTCGGCGAAAGAAGGAGACAGCTGAACCTGTGTCCGGCTAA 1059 52.79 MRWRCGIGPNKGRLEYFHWREIKDKPLTQSKPLIIFQCCCLWNLSRLPLFNLCSSLSGMDQCIESRALKESLRREAAMKTTPQVLYDDVLCGAGVNGVSGEDFSVDDLFDFSNGGLGVGVDDDNSNSSSFSGTGDFESLSAGGLAVPADDLEHLEWLSHFVDDSSASELSLLCPAVTGNSPSKRCEEEPRPALLRTPLFPTPLPAKPRSKRHRSSGRAWAFGSHSPSSSPSSSSSSSSTSCLIFANTVHNMESFYSLEKPPAKKPKKSPSADSQPQRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSVEIHSNSHRKVLEIRRKKETAEPVSG* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 452475 454201 + Vvi3g28 Vvi3g28 783703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g28 352 PANTHER GATA TRANSCRIPTION FACTOR 59 116 - -
Vvi3g28 352 PANTHER GATA TRANSCRIPTION FACTOR 120 350 - -
Vvi3g28 352 CDD ZnF_GATA 278 335 IPR000679 GO:0006355|GO:0043565
Vvi3g28 352 MobiDBLite consensus disorder prediction 177 237 - -
Vvi3g28 352 ProSiteProfiles GATA-type zinc finger domain profile. 273 309 IPR000679 GO:0006355|GO:0043565
Vvi3g28 352 Pfam GATA zinc finger 279 312 IPR000679 GO:0006355|GO:0043565
Vvi3g28 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 273 335 - -
Vvi3g28 352 Gene3D - 270 347 IPR013088 GO:0006355|GO:0008270
Vvi3g28 352 MobiDBLite consensus disorder prediction 257 280 - -
Vvi3g28 352 ProSitePatterns GATA-type zinc finger domain. 279 304 IPR000679 GO:0006355|GO:0043565
Vvi3g28 352 PANTHER GATA TRANSCRIPTION FACTOR 120 350 - -
Vvi3g28 352 PANTHER GATA TRANSCRIPTION FACTOR 59 116 - -
Vvi3g28 352 SMART GATA_3 273 323 IPR000679 GO:0006355|GO:0043565
Vvi3g28 352 MobiDBLite consensus disorder prediction 220 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g28 - - - vvi:100255460 520.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g28 Vvi4g1071 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14641 PF00320 GATA 2.30E-15 CL0167 Vvi TF