Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g284 ATGAACATTAATACAGATTTAATTGTTCATACTTCCAAAAACCCAGTAGAGACATTTGGAAACTTGGATTCATCTCAGCAGAGTGGCAGTAATTACCAAATTCAGAATCAAAACCCCAGAAAGAAGCGTTCGAAGTTGATCCGAATCGATCCTTCTGTGGTGGCGAGCTCTAGTGGCATTGTGAAGGCGAAATCTGGAAAGAAGGCTGACCCGAGTGCTCCAAAGATCACTCGGCCGTGCAGTGAGTGTGGCAAGAAGTTTTGGTCATGGAAGGCCTTGTTTGGGCACATGAGGTGCCACCCTGAGAGGCAGTGGAGGGGGATAAACCCACCTCCCAATTATAGACGCTCCGAAAAGGGTGTGGAGGATGCGGATTTGGGGATGAGCGAGGATGATCATGAGGCTGATGGGGCTGATGGGCTTGACGCATTGGGTGGGGGTTGTAGGTTTGAATGTTCAAGTTGTAAGAAGTGCAGTATCTGTTTGAGGGTGTTCTCTAGTGGTCAAGCCCTGGGTGGACACAAGAGGTGCCATTGGGAGAGAGGGGATGAGCCACCATCATCATTATCGTCACTCCCTCAAGGGCTCAACCCCTTTGCACCCAAGGCAGGTTTCGGTCTCGACTTGAACTTGCCTGCCCCATTGGAAGATGATTCCTATTGCTCTCATTCTTCAAATCTGGCTTTGGATTTAAGGCTGGGACTATGA 708 49.15 MNINTDLIVHTSKNPVETFGNLDSSQQSGSNYQIQNQNPRKKRSKLIRIDPSVVASSSGIVKAKSGKKADPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRSEKGVEDADLGMSEDDHEADGADGLDALGGGCRFECSSCKKCSICLRVFSSGQALGGHKRCHWERGDEPPSSLSSLPQGLNPFAPKAGFGLDLNLPAPLEDDSYCSHSSNLALDLRLGL* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2660981 2661950 + Vvi3g284 Vvi3g284 783959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g284 235 MobiDBLite consensus disorder prediction 21 45 - -
Vvi3g284 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 185 IPR013087 -
Vvi3g284 235 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 157 235 - -
Vvi3g284 235 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 4 157 - -
Vvi3g284 235 MobiDBLite consensus disorder prediction 21 40 - -
Vvi3g284 235 Pfam C2H2-type zinc finger 79 102 - -
Vvi3g284 235 Pfam C2H2-type zinc finger 157 180 - -
Vvi3g284 235 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 157 235 - -
Vvi3g284 235 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 4 157 - -
Vvi3g284 235 SMART c2h2final6 156 178 IPR013087 -
Vvi3g284 235 SMART c2h2final6 78 100 IPR013087 -
Vvi3g284 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Vvi3g284 235 Gene3D Classic Zinc Finger 78 178 - -
Vvi3g284 235 MobiDBLite consensus disorder prediction 116 134 - -
Vvi3g284 235 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Vvi3g284 235 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Vvi3g284 235 SUPERFAMILY beta-beta-alpha zinc fingers 79 178 IPR036236 -
Vvi3g284 235 MobiDBLite consensus disorder prediction 110 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g284 - - - vvi:100245119 311.227
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g284 . . Bda06g00439 . Bpe07g00672 . . Bma12g00878 Cmo19g00814 . . . . Car20g00616 Sed08g2863 . Cpe15g00638 Bhi05g01589 Tan02g0583 Cmetu11g2392 . Hepe02g0374 . . Cla02g00353 Cam02g0362 Cec02g0363 Cco02g0370 Clacu02g0353 Cmu02g0350 Cre02g0682 Cone12ag1272 Cone8ag1326 Cone3ag1243 . Lsi10g00828 Csa07g00181 . Cme01g01152 . . . . . . . . . . Cmo20g00713 . Cma19g00793 . Car19g00610 Cpe16g00350 . . . . . . . . . . . . . . . Lsi11g01280 . Chy01g00600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004114 2 1 1 2 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 2 2 1 2 2 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14642 PF13912 zf-C2H2_6 1.50E-11 CL0361 Vvi TF