Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g285 ATGGAAGATGGTTCTTTTACTCCTAATTCAGTATTTGGAGCCCCCTCAGACAGCGCCATGGATCTGAATTTTATGGATGAGCTCTTATTTGAAGGATGCTGGTTGGAGACCACTGATGGATTCAGTTTTTTGCAACCAGGTGCCTCCACTTCCACGGAAGGACTTGTTGGAACTCAAACTGAACTGAACAGAAGATTGTGGATTGGACCAAGTGCAAATCCAGGTCCTGTTTCCTCAGTGAAGAACAGATTGATTCTGGCAATTAGAAACTTGAGAGAATTTACTAAAGAGAGGGATGTCCTTATTCAGATATGGGTCCCTATAGAGAGAGGTGGCAAAAATGTTCTTACAACAAATGACCAACCATTCTCCCTTGATCCTGACTGCCAGAGTCTGGCAAATTATAGAAATGTTTCTGAGAATTATCACTTCCCTGCTGAGGAGGATTCAAAGGAGCAGGTTGGGTTGCCTGGCCGTGTTTTCTTGGGGAAGGTGCCTGAATGGACCCCTGATGTCCGTTTCTTTAAGAGTGAAGAGTACCCACGTATCAATTATGCCCAACGATACAATGTTCGGGGATCACTTGCACTTCCTGTTTTTGAACGAGGGAGTGGGGTTTGCTTGGGTGTCATTGAGATTGTGACAACTACTCAAAAGATCAATTATCGTCCTGAACTTGAAAATGTCTGCAAAGCTCTCGAGGCTGTTGATCTTCGGAGTTCTGAAGTTTTAATCCCACCTGTCAAGGCTTGCAATGAACTGTATCAAGCTGCATTGCCTGAGATTCTAAAGGTTTTGGCACGTGTCTGTCGGACACATAGATTACCTTTAGCTCAAACTTGGGCCCCATGTATCCAACAAGGTAAAGGTGGCTGCCGGCATTCTGATAAGAACTATGCTTTGTTTTTATCTACGGTTGATCATGCCTACTATGTGACTGATCCAAAATTTAAGGGCTTTAATGAGGCATGCTTCGATCACCACCTGTTTAGAGGACAGGGTGTTGTTGGCAGAGCATTAACAACAAATCAACCCTGTTTTGAAAGCGACATAACTGCCTTTAGCAAGACAGAATATCCTCTTTCTCACCATGCTAGGATGTTTGGGTTGCGTGCCGCTGTAGCAATCCGCCTAAAGAGCATCTATAATGGATCAGCTGATTTTATCTTGGAGTTTTTCTTACCAACAGATTGCCAAGAAACTGAAGAACAAAAGCAGGTGCTGAATTCATTATCCATTGTTATACAACAGACTTGTCAAATTTTCCGTGTTGTAACAGAGAAGGATCTAGAGAAAGAATCCATATTGCCAGTTGGTGAAATTTTATTTGCTTCAGATGAGAGAGTTAAACAAGAAGGATCTGTGAAATTGTTGTCACCTCCTATAAAAGAACCCTCTAGAGAAGAGTCATCCTGGATTGCCCATATGATGGAAGCCCAAAAGAAAGGTAAAGGTGTCTCTGTCTCGTTGGAGTATCAAAAGGAAGAGCCGGAAGAAGAGTTTAAAGTGACAACTAATTGGGATAACACTGAGGTGGAGTTACACCATGGGCAGGTATTCTCAGAGTTTGGGCAACCTCAGCAAAATTCAGGAGCCAAAGGTAGCGTTGAAGGTGGTGGAGATTCTTCTTTTGGTGGGCAACACTCATCAGGTAGCAGAAAAGCTCGAGAGAAGAGACGTACCAAGACAGAAAAGACTATCAGCTTGCAAGTTCTCAGCCAATACTTTGCTGGGAGCCTAAAAGATGCTGCTAAGAGTATTGGCGTGTGCCCCACTACCCTGAAAAGGATATGCAGGCAACATGGGATCACCCGTTGGCCTTCCCGGAAGATCAAGAAAGTTGGCCACTCATTAAGGAAACTCCAGCTTGTGATAGACTCAGTCCAAGGTACCCAGGGTGCTATTCAAATTGGGTCCTTCTATACAAACTTCCCAGAATTGAGCTCTCCAAATGTACCTGGGACTGTCCCATTTTCCTCATCCAAGATGACTGACGACTCAAAGCAATTAAACCCTCAATCTGAGGTGTTATTTAGCCCTGGAGTCACTACTTCAAAATCTCCCTCCTCTTCATGCAGTCAAAGCTCCAAGTTGCATCATCCTTGCGTTGAGACTTTACCTCCCCTGCCAAAGAGTAACAGCCGGGCCTTGCGCGATGGGGGTGGATTTAGAATCAAAGCCACTTTTGGTGAAGAGAATGTCCGGTTCAGCCTGCAGCTGAATTGGAGTTTCAAAGATCTACAACAAGAGATAGCGAGGCGATTTGGTATAGACAACATGAATAGCATTGATCTCAAGTATTTGGATGATGATTGTGAATGGGTTCTCTTGACATGCGATGCTGATCTTGAGGAGTGTATAGACGTATACAGATCATGCCAGAGCCGCAAAATTAAACTTTCTCTCCACCATTCTTCTCGTCTGAAACTGAAAAGTTCAGCTTTTAGCAGCGGTCCATCCTAA 2463 43.97 MEDGSFTPNSVFGAPSDSAMDLNFMDELLFEGCWLETTDGFSFLQPGASTSTEGLVGTQTELNRRLWIGPSANPGPVSSVKNRLILAIRNLREFTKERDVLIQIWVPIERGGKNVLTTNDQPFSLDPDCQSLANYRNVSENYHFPAEEDSKEQVGLPGRVFLGKVPEWTPDVRFFKSEEYPRINYAQRYNVRGSLALPVFERGSGVCLGVIEIVTTTQKINYRPELENVCKALEAVDLRSSEVLIPPVKACNELYQAALPEILKVLARVCRTHRLPLAQTWAPCIQQGKGGCRHSDKNYALFLSTVDHAYYVTDPKFKGFNEACFDHHLFRGQGVVGRALTTNQPCFESDITAFSKTEYPLSHHARMFGLRAAVAIRLKSIYNGSADFILEFFLPTDCQETEEQKQVLNSLSIVIQQTCQIFRVVTEKDLEKESILPVGEILFASDERVKQEGSVKLLSPPIKEPSREESSWIAHMMEAQKKGKGVSVSLEYQKEEPEEEFKVTTNWDNTEVELHHGQVFSEFGQPQQNSGAKGSVEGGGDSSFGGQHSSGSRKAREKRRTKTEKTISLQVLSQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGTQGAIQIGSFYTNFPELSSPNVPGTVPFSSSKMTDDSKQLNPQSEVLFSPGVTTSKSPSSSCSQSSKLHHPCVETLPPLPKSNSRALRDGGGFRIKATFGEENVRFSLQLNWSFKDLQQEIARRFGIDNMNSIDLKYLDDDCEWVLLTCDADLEECIDVYRSCQSRKIKLSLHHSSRLKLKSSAFSSGPS* 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2667487 2673608 + Vvi3g285 Vvi3g285 783960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g285 820 PANTHER PROTEIN NLP8 711 817 IPR045012 GO:0003700
Vvi3g285 820 PANTHER PROTEIN NLP8 58 702 IPR045012 GO:0003700
Vvi3g285 820 MobiDBLite consensus disorder prediction 521 550 - -
Vvi3g285 820 Pfam PB1 domain 723 804 IPR000270 GO:0005515
Vvi3g285 820 ProSiteProfiles PB1 domain profile. 722 805 IPR000270 GO:0005515
Vvi3g285 820 SUPERFAMILY CAD & PB1 domains 713 806 - -
Vvi3g285 820 ProSiteProfiles RWP-RK domain profile. 553 634 IPR003035 -
Vvi3g285 820 SMART PB1_new 722 805 IPR000270 GO:0005515
Vvi3g285 820 Gene3D - 723 805 - -
Vvi3g285 820 PANTHER PROTEIN NLP4 58 702 - -
Vvi3g285 820 PANTHER PROTEIN NLP4 711 817 - -
Vvi3g285 820 Pfam RWP-RK domain 566 614 IPR003035 -
Vvi3g285 820 CDD PB1_NLP 723 804 IPR034891 -
Vvi3g285 820 MobiDBLite consensus disorder prediction 521 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g285 - - - vvi:100267426 1323.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g285 Vvi18g95 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1273 Cone8ag1327 Cone3ag1247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14643 PF00564 PB1 5.60E-20 CL0072 Vvi TF